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Difference between revisions of "TSS:Hg 100406.1"

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(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=4 |entrez_id=54840 |gc_percent=0.587065 |gene_alias=AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT |gene_description=aprataxin |gene_name=APTX...")
 
 
(4 intermediate revisions by the same user not shown)
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{{TSSDetail
 
{{TSSDetail
 +
|AOA1=
 +
|AXA1=
 +
|EAOH=
 +
|EOAHA=
 +
|FHA-HIT=
 +
|all_trans=HGNC:15984
 +
|chr=chr9
 
|cpg_percent=0.09
 
|cpg_percent=0.09
 +
|distance=0
 
|distance_to_tss=4
 
|distance_to_tss=4
 +
|end=33001646
 +
|end_of_center_position=33001608
 
|entrez_id=54840
 
|entrez_id=54840
 
|gc_percent=0.587065
 
|gc_percent=0.587065
|gene_alias=AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT
+
|gene_alias=AOA{{!}}AOA1{{!}}AXA1{{!}}EAOH{{!}}EOAHA{{!}}FHA-HIT
 
|gene_description=aprataxin
 
|gene_description=aprataxin
|gene_name=APTX
+
|gene_id=54840
 +
|gene_name=aprataxin
 +
|gene_source=HGNC:15984
 +
|gene_symbol=APTX
 +
|gene_synonyms=AOA AOA1 EAOH EOAHA FLJ20157
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:15984
 
|nearest_ensembl=ENSG00000137074
 
|nearest_ensembl=ENSG00000137074
 
|nearest_promoter_id=NM_001195254
 
|nearest_promoter_id=NM_001195254
 
|nearest_refseq=NM_017692
 
|nearest_refseq=NM_017692
 
|nearest_unigene=Hs.20158
 
|nearest_unigene=Hs.20158
 +
|num_trans=54840
 +
|species=human
 +
|start=33001569
 +
|start_of_center_position=33001607
 +
|strand=-
 +
|transcript_name=ENST00000672846.1 ENST00000672519.1 ENST00000672244.1 ENST00000673416.1 ENST00000379825.7 ENST00000397172.8 ENST00000379817.7 ENST00000465003.6 ENST00000472896.6 ENST00000479656.6 ENST00000483148.6 ENST00000672438.1 ENST00000673598.1 ENST00000309615.8 ENST00000379819.6 ENST00000672286.1 ENST00000474658.7 ENST00000672535.1 ENST00000476858.6 ENST00000379813.7 ENST00000477119.2 ENST00000671912.1 ENST00000464632.6 ENST00000478279.6 ENST00000480031.6 ENST00000460945.6 ENST00000494973.1 ENST00000672553.1 AK131046 AY208831 AK055672 AY040777 BX538161 AY208837 AY208829 AY208840 AY208830 BC068107 AY208834 AY208832 AB528955 AJ565850 AJ565851 AJ565852
 +
|tss_classification=yes
 
|tss_id=hg_100406.1
 
|tss_id=hg_100406.1
 +
|tss_score=1
 +
|uniprot_id=A0A0A0MRW7 A0A5F9ZGW5 A0A5F9ZI51 A0A5K1VW64 C9J8U3 F8WBD6 F8WBM3 Q6JV79 Q7Z2E3
 
}}
 
}}

Latest revision as of 17:42, 19 July 2021

Basic information about the TSS


TSS ID:hg_100406.1
Species:human
Chr:chr9
TSS Classification:yes
Start:33001569
End:33001646
Strand:-
TSS Score:1
Start of the center position in the TSS region:33001607
End of the center position in the TSS region:33001608



Gene and protein annotation


Transcript_name:ENST00000672846.1 ENST00000672519.1 ENST00000672244.1 ENST00000673416.1 ENST00000379825.7 ENST00000397172.8 ENST00000379817.7 ENST00000465003.6 ENST00000472896.6 ENST00000479656.6 ENST00000483148.6 ENST00000672438.1 ENST00000673598.1 ENST00000309615.8 ENST00000379819.6 ENST00000672286.1 ENST00000474658.7 ENST00000672535.1 ENST00000476858.6 ENST00000379813.7 ENST00000477119.2 ENST00000671912.1 ENST00000464632.6 ENST00000478279.6 ENST00000480031.6 ENST00000460945.6 ENST00000494973.1 ENST00000672553.1 AK131046 AY208831 AK055672 AY040777 BX538161 AY208837 AY208829 AY208840 AY208830 BC068107 AY208834 AY208832 AB528955 AJ565850 AJ565851 AJ565852
Distance:0
GeneID:54840
HGNC/MGI_ID:HGNC:15984
UniProt_ID:A0A0A0MRW7 A0A5F9ZGW5 A0A5F9ZI51 A0A5K1VW64 C9J8U3 F8WBD6 F8WBM3 Q6JV79 Q7Z2E3
Gene_name:aprataxin
Gene_symbol:APTX
Gene_synonyms:AOA AOA1 EAOH EOAHA FLJ20157
Gene_source:HGNC:15984



Transcript annotation


Transcript_name:ENST00000672846.1 ENST00000672519.1 ENST00000672244.1 ENST00000673416.1 ENST00000379825.7 ENST00000397172.8 ENST00000379817.7 ENST00000465003.6 ENST00000472896.6 ENST00000479656.6 ENST00000483148.6 ENST00000672438.1 ENST00000673598.1 ENST00000309615.8 ENST00000379819.6 ENST00000672286.1 ENST00000474658.7 ENST00000672535.1 ENST00000476858.6 ENST00000379813.7 ENST00000477119.2 ENST00000671912.1 ENST00000464632.6 ENST00000478279.6 ENST00000480031.6 ENST00000460945.6 ENST00000494973.1 ENST00000672553.1 AK131046 AY208831 AK055672 AY040777 BX538161 AY208837 AY208829 AY208840 AY208830 BC068107 AY208834 AY208832 AB528955 AJ565850 AJ565851 AJ565852
Distance:0
Num_trans:54840
All_trans:HGNC:15984



TATA-Box annotation


Distance to TSS:4
Nearest PromoterID:NM_001195254
Entrez ID:54840
Nearest Unigene:Hs.20158
Nearest Refseq:NM_017692
Nearest Ensembl:ENSG00000137074
Gene Name:aprataxin
Gene Alias:AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT
Gene Description:aprataxin
Gene Type:protein-coding
CpG%:0.09
GC%:0.587065
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):