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Difference between revisions of "TSS:Hg 100406.1"

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Line 5: Line 5:
 
|EOAHA=
 
|EOAHA=
 
|FHA-HIT=
 
|FHA-HIT=
−
|all_trans=ENST00000379825.6:0 ENST00000436040.6:0 ENST00000309615.7:0 ENST00000397172.7:0 ENST00000379819.5:0 ENST00000474658.6:0 ENST00000476858.5:0 ENST00000379813.7:0 ENST00000379812.9:0 ENST00000473221.5:0 ENST00000464632.5:0 ENST00000478279.5:0 ENST00000480031.5:0 ENST00000477119.1:0 ENST00000494973.1:0 NM_001195254:0 NM_001195252:0 NM_001195251:0 NM_001195249:0 NM_001195250:0 NM_001195248:0 NM_175073:0 NM_175069:0 NR_036579:0 NR_036578:0 NR_036577:0 NR_036576:0 uc064snf.1:0 uc064sng.1:0 uc003zrr.4:0 uc003zrw.4:0 uc003zry.4:0 uc064snr.1:0 uc003zru.4:0 uc064sns.1:0 uc064snv.1:0 uc064snw.1:0 uc064snx.1:0 uc064sny.1:0 uc064snz.1:0 uc064soa.1:0 uc064sod.1:0 AK131046:0 AY208831:0 AK055672:0 AY040777:0 BX538161:0 AY208837:0 AY208829:0 AY208840:0 AY208830:0 BC068107:0 AY208834:0 AY208832:0 AB528955:0 AJ565850:0 AJ565851:0 AJ565852:0 AY208833:5 AY208835:25 ENST00000463596.5:48 uc003zro.4:48 AY208836:48 ENST00000494649.5:49 uc064snh.1:49 AY208839:49
+
|all_trans=HGNC:15984
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.09
 
|cpg_percent=0.09
Line 14: Line 14:
 
|entrez_id=54840
 
|entrez_id=54840
 
|gc_percent=0.587065
 
|gc_percent=0.587065
−
|gene_alias=AOA
+
|gene_alias=AOA{{!}}AOA1{{!}}AXA1{{!}}EAOH{{!}}EOAHA{{!}}FHA-HIT
 
|gene_description=aprataxin
 
|gene_description=aprataxin
 
|gene_id=54840
 
|gene_id=54840
Line 27: Line 27:
 
|nearest_refseq=NM_017692
 
|nearest_refseq=NM_017692
 
|nearest_unigene=Hs.20158
 
|nearest_unigene=Hs.20158
−
|num_trans=66
+
|num_trans=54840
 
|species=human
 
|species=human
 
|start=33001569
 
|start=33001569
 
|start_of_center_position=33001607
 
|start_of_center_position=33001607
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000379825.6 ENST00000436040.6 ENST00000309615.7 ENST00000397172.7 ENST00000379819.5 ENST00000474658.6 ENST00000476858.5 ENST00000379813.7 ENST00000379812.9 ENST00000473221.5 ENST00000464632.5 ENST00000478279.5 ENST00000480031.5 ENST00000477119.1 ENST00000494973.1 NM_001195254 NM_001195252 NM_001195251 NM_001195249 NM_001195250 NM_001195248 NM_175073 NM_175069 NR_036579 NR_036578 NR_036577 NR_036576 uc064snf.1 uc064sng.1 uc003zrr.4 uc003zrw.4 uc003zry.4 uc064snr.1 uc003zru.4 uc064sns.1 uc064snv.1 uc064snw.1 uc064snx.1 uc064sny.1 uc064snz.1 uc064soa.1 uc064sod.1 AK131046 AY208831 AK055672 AY040777 BX538161 AY208837 AY208829 AY208840 AY208830 BC068107 AY208834 AY208832 AB528955 AJ565850 AJ565851 AJ565852
+
|transcript_name=ENST00000672846.1 ENST00000672519.1 ENST00000672244.1 ENST00000673416.1 ENST00000379825.7 ENST00000397172.8 ENST00000379817.7 ENST00000465003.6 ENST00000472896.6 ENST00000479656.6 ENST00000483148.6 ENST00000672438.1 ENST00000673598.1 ENST00000309615.8 ENST00000379819.6 ENST00000672286.1 ENST00000474658.7 ENST00000672535.1 ENST00000476858.6 ENST00000379813.7 ENST00000477119.2 ENST00000671912.1 ENST00000464632.6 ENST00000478279.6 ENST00000480031.6 ENST00000460945.6 ENST00000494973.1 ENST00000672553.1 AK131046 AY208831 AK055672 AY040777 BX538161 AY208837 AY208829 AY208840 AY208830 BC068107 AY208834 AY208832 AB528955 AJ565850 AJ565851 AJ565852
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100406.1
 
|tss_id=hg_100406.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=A0A0A0MRW7 C9J8U3 C9JZ40 E7EUY4 E7EVB7 F8W6G5 F8WBD6 F8WBM3 Q7Z2E3
+
|uniprot_id=A0A0A0MRW7 A0A5F9ZGW5 A0A5F9ZI51 A0A5K1VW64 C9J8U3 F8WBD6 F8WBM3 Q6JV79 Q7Z2E3
 
}}
 
}}

Latest revision as of 17:42, 19 July 2021

Basic information about the TSS

TSS ID:hg_100406.1
Species:human
Chr:chr9
TSS Classification:yes
Start:33001569
End:33001646
Strand:-
TSS Score:1
Start of the center position in the TSS region:33001607
End of the center position in the TSS region:33001608



Gene and protein annotation

Transcript_name:ENST00000672846.1 ENST00000672519.1 ENST00000672244.1 ENST00000673416.1 ENST00000379825.7 ENST00000397172.8 ENST00000379817.7 ENST00000465003.6 ENST00000472896.6 ENST00000479656.6 ENST00000483148.6 ENST00000672438.1 ENST00000673598.1 ENST00000309615.8 ENST00000379819.6 ENST00000672286.1 ENST00000474658.7 ENST00000672535.1 ENST00000476858.6 ENST00000379813.7 ENST00000477119.2 ENST00000671912.1 ENST00000464632.6 ENST00000478279.6 ENST00000480031.6 ENST00000460945.6 ENST00000494973.1 ENST00000672553.1 AK131046 AY208831 AK055672 AY040777 BX538161 AY208837 AY208829 AY208840 AY208830 BC068107 AY208834 AY208832 AB528955 AJ565850 AJ565851 AJ565852
Distance:0
GeneID:54840
HGNC/MGI_ID:HGNC:15984
UniProt_ID:A0A0A0MRW7 A0A5F9ZGW5 A0A5F9ZI51 A0A5K1VW64 C9J8U3 F8WBD6 F8WBM3 Q6JV79 Q7Z2E3
Gene_name:aprataxin
Gene_symbol:APTX
Gene_synonyms:AOA AOA1 EAOH EOAHA FLJ20157
Gene_source:HGNC:15984



Transcript annotation

Transcript_name:ENST00000672846.1 ENST00000672519.1 ENST00000672244.1 ENST00000673416.1 ENST00000379825.7 ENST00000397172.8 ENST00000379817.7 ENST00000465003.6 ENST00000472896.6 ENST00000479656.6 ENST00000483148.6 ENST00000672438.1 ENST00000673598.1 ENST00000309615.8 ENST00000379819.6 ENST00000672286.1 ENST00000474658.7 ENST00000672535.1 ENST00000476858.6 ENST00000379813.7 ENST00000477119.2 ENST00000671912.1 ENST00000464632.6 ENST00000478279.6 ENST00000480031.6 ENST00000460945.6 ENST00000494973.1 ENST00000672553.1 AK131046 AY208831 AK055672 AY040777 BX538161 AY208837 AY208829 AY208840 AY208830 BC068107 AY208834 AY208832 AB528955 AJ565850 AJ565851 AJ565852
Distance:0
Num_trans:54840
All_trans:HGNC:15984



TATA-Box annotation

Distance to TSS:4
Nearest PromoterID:NM_001195254
Entrez ID:54840
Nearest Unigene:Hs.20158
Nearest Refseq:NM_017692
Nearest Ensembl:ENSG00000137074
Gene Name:aprataxin
Gene Alias:AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT
Gene Description:aprataxin
Gene Type:protein-coding
CpG%:0.09
GC%:0.587065
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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