Difference between revisions of "TSS:Hg 100408.1"
From referenceTSS
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |AOA1= | ||
| + | |AXA1= | ||
|DjA1= | |DjA1= | ||
| + | |EAOH= | ||
| + | |EOAHA= | ||
| + | |FHA-HIT= | ||
|HDJ2= | |HDJ2= | ||
|HSDJ= | |HSDJ= | ||
| Line 7: | Line 12: | ||
|HSPF4= | |HSPF4= | ||
|NEDD7= | |NEDD7= | ||
| − | |all_trans= | + | |all_trans=HGNC:15984 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=52 |
|end=33025082 | |end=33025082 | ||
| − | |entrez_id= | + | |end_of_center_position=33025069 |
| + | |entrez_id=54840 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias= | + | |gene_alias=AOA{{!}}AOA1{{!}}AXA1{{!}}EAOH{{!}}EOAHA{{!}}FHA-HIT |
| − | |gene_description= | + | |gene_description=aprataxin |
|gene_id=54840 | |gene_id=54840 | ||
|gene_name=aprataxin | |gene_name=aprataxin | ||
| Line 25: | Line 31: | ||
|hDJ-2= | |hDJ-2= | ||
|hgnc_mgi_id=HGNC:15984 | |hgnc_mgi_id=HGNC:15984 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000137074 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001368999 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_017692 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.20158 |
| − | |num_trans= | + | |num_trans=54840 |
|species=human | |species=human | ||
|start=33025054 | |start=33025054 | ||
| + | |start_of_center_position=33025068 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000673360.1 ENST00000485479.6 ENST00000673248.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100408.1 | |tss_id=hg_100408.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=F8WBM3 Q7Z2E3 |
}} | }} | ||
Latest revision as of 17:42, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33025068 |
|---|---|
| End of the center position in the TSS region: | 33025069 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000673360.1 ENST00000485479.6 ENST00000673248.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 54840 |
| All_trans: | HGNC:15984 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NM_001368999 |
| Entrez ID: | 54840 |
| Nearest Unigene: | Hs.20158 |
| Nearest Refseq: | NM_017692 |
| Nearest Ensembl: | ENSG00000137074 |
| Gene Name: | aprataxin |
| Gene Alias: | AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT |
| Gene Description: | aprataxin |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
