Difference between revisions of "TSS:Hg 100488.1"
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000360802 | + | |all_trans=NM_001370059:0 ENST00000360802.5:233 ENST00000412543.5:233 NM_018449:233 LF383860:233 MA619437:233 AK302335:253 BC111409:280 ENST00000379238.7:295 ENST00000629575.2:295 ENST00000459988.1:295 NM_001370066:295 NM_001370064:295 NM_001370062:295 NM_001370067:295 NM_001370068:295 NR_163243:295 AK303493:295 AK299183:295 AK294952:295 CR933678:295 AK302754:297 ENST00000480885.5:310 AB209911:310 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=34049213 | |end=34049213 | ||
|end_of_center_position=34049198 | |end_of_center_position=34049198 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:14185 | |hgnc_mgi_id=HGNC:14185 | ||
|nearest_ensembl=ENSG00000137073 | |nearest_ensembl=ENSG00000137073 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370059 |
|nearest_refseq=NM_018449 | |nearest_refseq=NM_018449 | ||
|nearest_unigene=Hs.493739 | |nearest_unigene=Hs.493739 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=34049197 | |start_of_center_position=34049197 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001370059.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100488.1 | |tss_id=hg_100488.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 17:44, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 34049197 |
|---|---|
| End of the center position in the TSS region: | 34049198 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001370059.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | NM_001370059:0 ENST00000360802.5:233 ENST00000412543.5:233 NM_018449:233 LF383860:233 MA619437:233 AK302335:253 BC111409:280 ENST00000379238.7:295 ENST00000629575.2:295 ENST00000459988.1:295 NM_001370066:295 NM_001370064:295 NM_001370062:295 NM_001370067:295 NM_001370068:295 NR_163243:295 AK303493:295 AK299183:295 AK294952:295 CR933678:295 AK302754:297 ENST00000480885.5:310 AB209911:310 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_001370059 |
| Entrez ID: | 55833 |
| Nearest Unigene: | Hs.493739 |
| Nearest Refseq: | NM_018449 |
| Nearest Ensembl: | ENSG00000137073 |
| Gene Name: | ubiquitin associated protein 2 |
| Gene Alias: | UBAP-2 |
| Gene Description: | ubiquitin associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
