Difference between revisions of "TSS:Hg 1005.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:25540 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=5 | |distance_to_tss=5 | ||
|end=17618324 | |end=17618324 | ||
| + | |end_of_center_position=17618318 | ||
|entrez_id=55160 | |entrez_id=55160 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_018125 | |nearest_refseq=NM_018125 | ||
|nearest_unigene=Hs.443460 | |nearest_unigene=Hs.443460 | ||
| − | |num_trans= | + | |num_trans=55160 |
|species=human | |species=human | ||
|start=17618311 | |start=17618311 | ||
| + | |start_of_center_position=17618317 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000375408.7 | + | |transcript_name=ENST00000375408.7 AK092020 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_1005.1 | |tss_id=hg_1005.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q5VXI4 | + | |uniprot_id=Q5VXI4 Q9HCE6 |
}} | }} | ||
Latest revision as of 17:44, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17618317 |
|---|---|
| End of the center position in the TSS region: | 17618318 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375408.7 AK092020 |
|---|---|
| Distance: | 0 |
| Num_trans: | 55160 |
| All_trans: | HGNC:25540 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_001319838 |
| Entrez ID: | 55160 |
| Nearest Unigene: | Hs.443460 |
| Nearest Refseq: | NM_018125 |
| Nearest Ensembl: | ENSG00000074964 |
| Gene Name: | Rho guanine nucleotide exchange factor 10 like |
| Gene Alias: | GrinchGEF |
| Gene Description: | Rho guanine nucleotide exchange factor 10 like |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
