Difference between revisions of "TSS:Hg 100513.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:19920 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=-26 | ||
|distance_to_tss=47 | |distance_to_tss=47 | ||
| + | |end=34458526 | ||
| + | |end_of_center_position=34458523 | ||
|entrez_id=203259 | |entrez_id=203259 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=C9orf25 | |gene_alias=C9orf25 | ||
|gene_description=family with sequence similarity 219 member A | |gene_description=family with sequence similarity 219 member A | ||
| − | |gene_name=FAM219A | + | |gene_id=203259 |
| + | |gene_name=family with sequence similarity 219 member A | ||
| + | |gene_source=HGNC:19920 | ||
| + | |gene_symbol=FAM219A | ||
| + | |gene_synonyms=FLJ39031 bA573M23.5 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19920 | ||
|nearest_ensembl=ENSG00000164970 | |nearest_ensembl=ENSG00000164970 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001184943 |
|nearest_refseq=NM_147202 | |nearest_refseq=NM_147202 | ||
|nearest_unigene=Hs.493771 | |nearest_unigene=Hs.493771 | ||
| + | |num_trans=203259 | ||
| + | |species=human | ||
| + | |start=34458519 | ||
| + | |start_of_center_position=34458522 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000422409.5 ENST00000379078.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100513.1 | |tss_id=hg_100513.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0A0MRV9 A0A0A0MRW0 A0A0A0MRW1 A0A0A0MRW2 A0A0A0MRW3 Q5T586 Q5T593 | ||
}} | }} | ||
Latest revision as of 17:45, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 34458522 |
|---|---|
| End of the center position in the TSS region: | 34458523 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000422409.5 ENST00000379078.1 |
|---|---|
| Distance: | -26 |
| Num_trans: | 203259 |
| All_trans: | HGNC:19920 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NM_001184943 |
| Entrez ID: | 203259 |
| Nearest Unigene: | Hs.493771 |
| Nearest Refseq: | NM_147202 |
| Nearest Ensembl: | ENSG00000164970 |
| Gene Name: | family with sequence similarity 219 member A |
| Gene Alias: | C9orf25 |
| Gene Description: | family with sequence similarity 219 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
