Difference between revisions of "TSS:Hg 100572.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000378557.1:14 | + | |all_trans=NM_001317991:0 ENST00000378557.1:14 AL583909:63 ENST00000378561.5:-116 AB040972:-116 LF354330:120 MA589907:120 ENST00000603301.5:-130 LF354329:361 MA589906:361 LF354328:471 MA589905:471 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=5 |
|end=35111458 | |end=35111458 | ||
|end_of_center_position=35111448 | |end_of_center_position=35111448 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_025182 | |nearest_refseq=NM_025182 | ||
|nearest_unigene=Hs.301696 | |nearest_unigene=Hs.301696 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=35111436 | |start=35111436 | ||
|start_of_center_position=35111447 | |start_of_center_position=35111447 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001317991.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100572.1 | |tss_id=hg_100572.1 | ||
Latest revision as of 17:46, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 35111447 |
|---|---|
| End of the center position in the TSS region: | 35111448 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001317991.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | NM_001317991:0 ENST00000378557.1:14 AL583909:63 ENST00000378561.5:-116 AB040972:-116 LF354330:120 MA589907:120 ENST00000603301.5:-130 LF354329:361 MA589906:361 LF354328:471 MA589905:471 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_001317991 |
| Entrez ID: | 80256 |
| Nearest Unigene: | Hs.301696 |
| Nearest Refseq: | NM_025182 |
| Nearest Ensembl: | ENSG00000005238 |
| Gene Name: | family with sequence similarity 214 member B |
| Gene Alias: | KIAA1539 |
| Gene Description: | family with sequence similarity 214 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
