Difference between revisions of "TSS:Hg 100612.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|DA1= | |DA1= | ||
|DA2B= | |DA2B= | ||
| + | |DA2B4= | ||
|HEL-S-273= | |HEL-S-273= | ||
|NEM4= | |NEM4= | ||
|TMSB= | |TMSB= | ||
| + | |all_trans=HGNC:12011 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-481 |
| − | |distance_to_tss= | + | |distance_to_tss=5620 |
|end=35684321 | |end=35684321 | ||
|end_of_center_position=35684306 | |end_of_center_position=35684306 | ||
|entrez_id=7169 | |entrez_id=7169 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=AMCD1 | + | |gene_alias=AMCD1{{!}}DA1{{!}}DA2B{{!}}DA2B4{{!}}HEL-S-273{{!}}NEM4{{!}}TMSB |
| − | |gene_description=tropomyosin 2 | + | |gene_description=tropomyosin 2 |
| − | |gene_name=TPM2 | + | |gene_id=7169 |
| + | |gene_name=tropomyosin 2 | ||
| + | |gene_source=HGNC:12011 | ||
| + | |gene_symbol=TPM2 | ||
| + | |gene_synonyms=DA1 NEM4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12011 | ||
|nearest_ensembl=ENSG00000198467 | |nearest_ensembl=ENSG00000198467 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001301226 |
|nearest_refseq=NM_003289 | |nearest_refseq=NM_003289 | ||
|nearest_unigene=Hs.300772 | |nearest_unigene=Hs.300772 | ||
| − | |num_trans= | + | |num_trans=7169 |
|species=human | |species=human | ||
|start=35684289 | |start=35684289 | ||
|start_of_center_position=35684305 | |start_of_center_position=35684305 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=69(GCCTTTATAAGT,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000644325.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100612.1 | |tss_id=hg_100612.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A2R8Y6A3 | ||
}} | }} | ||
Latest revision as of 17:47, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35684305 |
|---|---|
| End of the center position in the TSS region: | 35684306 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000644325.1 |
|---|---|
| Distance: | -481 |
| Num_trans: | 7169 |
| All_trans: | HGNC:12011 |
TATA-Box annotation
| Distance to TSS: | 5620 |
|---|---|
| Nearest PromoterID: | NM_001301226 |
| Entrez ID: | 7169 |
| Nearest Unigene: | Hs.300772 |
| Nearest Refseq: | NM_003289 |
| Nearest Ensembl: | ENSG00000198467 |
| Gene Name: | tropomyosin 2 |
| Gene Alias: | AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB |
| Gene Description: | tropomyosin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 69(GCCTTTATAAGT,-,0.00) |
