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Difference between revisions of "TSS:Hg 100693.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000377877.4:-17 uc003zzl.5:-17 AK093480:-19 AF394047:-23 ENST00000357058.7:-68 ENST00000350199.8:-68 NM_194332:-68 NM_194328:-68 uc003zzk.5:-68 uc003zzj.5:-68 AK097653:212 ENST00000491349.5:-341 uc064tas.1:-341 ENST00000377885.6:-343 ENST00000484621.1:-343 NM_194330:-343 uc003zzm.5:-343 uc064tat.1:-343
+
|all_trans=HGNC:18052
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.145
 
|cpg_percent=0.145
Line 22: Line 22:
 
|nearest_refseq=NM_022781
 
|nearest_refseq=NM_022781
 
|nearest_unigene=Hs.333503
 
|nearest_unigene=Hs.333503
|num_trans=18
+
|num_trans=152006
 
|species=human
 
|species=human
 
|start=36400833
 
|start=36400833
 
|start_of_center_position=36400844
 
|start_of_center_position=36400844
 
|strand=-
 
|strand=-
|transcript_name=ENST00000377877.4 uc003zzl.5
+
|transcript_name=ENST00000377877.4
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100693.1
 
|tss_id=hg_100693.1

Latest revision as of 17:49, 19 July 2021

Basic information about the TSS


TSS ID:hg_100693.1
Species:human
Chr:chr9
TSS Classification:yes
Start:36400833
End:36400855
Strand:-
TSS Score:1
Start of the center position in the TSS region:36400844
End of the center position in the TSS region:36400845



Gene and protein annotation


Transcript_name:ENST00000377877.4
Distance:-17
GeneID:152006
HGNC/MGI_ID:HGNC:18052
UniProt_ID:Q9H0F5
Gene_name:ring finger protein 38
Gene_symbol:RNF38
Gene_synonyms:
Gene_source:HGNC:18052



Transcript annotation


Transcript_name:ENST00000377877.4
Distance:-17
Num_trans:152006
All_trans:HGNC:18052



TATA-Box annotation


Distance to TSS:79
Nearest PromoterID:NM_194332
Entrez ID:152006
Nearest Unigene:Hs.333503
Nearest Refseq:NM_022781
Nearest Ensembl:ENSG00000137075
Gene Name:ring finger protein 38
Gene Alias:-
Gene Description:ring finger protein 38
Gene Type:protein-coding
CpG%:0.145
GC%:0.781095
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):