Difference between revisions of "TSS:Hg 100721.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|BSAP= | |BSAP= | ||
| − | |all_trans= | + | |all_trans=HGNC:8619 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| − | |num_trans= | + | |num_trans=5079 |
|species=human | |species=human | ||
|start=37034472 | |start=37034472 | ||
| Line 29: | Line 29: | ||
|strand=- | |strand=- | ||
|tata_box=-34(CCCTATAAAAGT,-,0.00) | |tata_box=-34(CCCTATAAAAGT,-,0.00) | ||
| − | |transcript_name=ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 | + | |transcript_name=ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100721.1 | |tss_id=hg_100721.1 | ||
Latest revision as of 17:49, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37034474 |
|---|---|
| End of the center position in the TSS region: | 37034475 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 |
|---|---|
| Distance: | 205 |
| Num_trans: | 5079 |
| All_trans: | HGNC:8619 |
TATA-Box annotation
| Distance to TSS: | -207 |
|---|---|
| Nearest PromoterID: | NM_001280553 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3|BSAP |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CCCTATAAAAGT,-,0.00) |
