Difference between revisions of "TSS:Hg 100781.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:53430 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-294 | ||
|distance_to_tss=99044 | |distance_to_tss=99044 | ||
| + | |end=38720134 | ||
| + | |end_of_center_position=38720132 | ||
|entrez_id=158228 | |entrez_id=158228 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=C9orf122 | |gene_alias=C9orf122 | ||
|gene_description=family with sequence similarity 201 member A | |gene_description=family with sequence similarity 201 member A | ||
| − | |gene_name= | + | |gene_id= |
| + | |gene_name=family with sequence similarity 240 member B | ||
| + | |gene_source=HGNC:53430 | ||
| + | |gene_symbol=FAM240B | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:53430 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_027294 | |nearest_promoter_id=NR_027294 | ||
|nearest_refseq=NR_027294 | |nearest_refseq=NR_027294 | ||
|nearest_unigene=Hs.632652 | |nearest_unigene=Hs.632652 | ||
| − | |tata_box= | + | |num_trans= |
| + | |species=human | ||
| + | |start=38720129 | ||
| + | |start_of_center_position=38720131 | ||
| + | |strand=- | ||
| + | |tata_box=-32(CCTTATATAGGG,+,0.00),-32(CCTTATATAGGG,-,0.00) | ||
| + | |transcript_name=ENST00000637493.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100781.1 | |tss_id=hg_100781.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A1B0GVZ2 | ||
}} | }} | ||
Latest revision as of 17:51, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 38720131 |
|---|---|
| End of the center position in the TSS region: | 38720132 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000637493.1 |
|---|---|
| Distance: | -294 |
| Num_trans: | |
| All_trans: | HGNC:53430 |
TATA-Box annotation
| Distance to TSS: | 99044 |
|---|---|
| Nearest PromoterID: | NR_027294 |
| Entrez ID: | 158228 |
| Nearest Unigene: | Hs.632652 |
| Nearest Refseq: | NR_027294 |
| Nearest Ensembl: | |
| Gene Name: | family with sequence similarity 240 member B |
| Gene Alias: | C9orf122 |
| Gene Description: | family with sequence similarity 201 member A |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(CCTTATATAGGG,+,0.00),-32(CCTTATATAGGG,-,0.00) |
