Difference between revisions of "TSS:Hg 100794.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=25 |entrez_id=642236 |gc_percent=0.616915 |gene_alias=- |gene_description="FSHD region gene 1 family member J, pseudogene" |gen...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NR_033907:-15 ENST00000376334.3:-22 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| + | |distance=-15 | ||
|distance_to_tss=25 | |distance_to_tss=25 | ||
| + | |end=63859619 | ||
| + | |end_of_center_position=63859609 | ||
|entrez_id=642236 | |entrez_id=642236 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=FSHD region gene 1 family member J, pseudogene |
| − | |gene_name=FRG1JP | + | |gene_id=642236 |
| + | |gene_name=FSHD region gene 1 family member J, pseudogene | ||
| + | |gene_source=HGNC:51768 | ||
| + | |gene_symbol=FRG1JP | ||
| + | |gene_synonyms= | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:51768 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_033907 | |nearest_promoter_id=NR_033907 | ||
|nearest_refseq=NR_033907 | |nearest_refseq=NR_033907 | ||
|nearest_unigene=Hs.650100 | |nearest_unigene=Hs.650100 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=63859598 | ||
| + | |start_of_center_position=63859608 | ||
| + | |strand=- | ||
| + | |transcript_name=NR_033907.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100794.1 | |tss_id=hg_100794.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 17:51, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 63859608 |
|---|---|
| End of the center position in the TSS region: | 63859609 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_033907.2 |
|---|---|
| Distance: | -15 |
| Num_trans: | 2 |
| All_trans: | NR_033907:-15 ENST00000376334.3:-22 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NR_033907 |
| Entrez ID: | 642236 |
| Nearest Unigene: | Hs.650100 |
| Nearest Refseq: | NR_033907 |
| Nearest Ensembl: | |
| Gene Name: | FSHD region gene 1 family member J, pseudogene |
| Gene Alias: | - |
| Gene Description: | FSHD region gene 1 family member J, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.055 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
