Difference between revisions of "TSS:Hg 101.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000378821.3:210 NM_001146685:210 | + | |all_trans=ENST00000378821.3:210 NM_001146685:210 LF383938:210 MA619515:210 LF357554:461 MA593131:461 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-236 | |distance_to_tss=-236 | ||
|end=1425918 | |end=1425918 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001146685 | |nearest_refseq=NM_001146685 | ||
|nearest_unigene=Hs.729765 | |nearest_unigene=Hs.729765 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=1425865 | |start=1425865 | ||
|start_of_center_position=1425891 | |start_of_center_position=1425891 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001146685.2 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_101.1 | |tss_id=hg_101.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A6NKF7 | |uniprot_id=A6NKF7 | ||
}} | }} | ||
Latest revision as of 17:55, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 1425891 |
|---|---|
| End of the center position in the TSS region: | 1425892 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001146685.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000378821.3:210 NM_001146685:210 LF383938:210 MA619515:210 LF357554:461 MA593131:461 |
TATA-Box annotation
| Distance to TSS: | -236 |
|---|---|
| Nearest PromoterID: | NM_001146685 |
| Entrez ID: | 643965 |
| Nearest Unigene: | Hs.729765 |
| Nearest Refseq: | NM_001146685 |
| Nearest Ensembl: | ENSG00000205116 |
| Gene Name: | transmembrane protein 88B |
| Gene Alias: | - |
| Gene Description: | transmembrane protein 88B |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
