Difference between revisions of "TSS:Hg 101019.1"
From referenceTSS
| (3 intermediate revisions by the same user not shown) | |||
| Line 4: | Line 4: | ||
|HOMG1= | |HOMG1= | ||
|HSH= | |HSH= | ||
| − | |all_trans= | + | |all_trans=HGNC:17995 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=12 | |distance=12 | ||
| − | |distance_to_tss= | + | |distance_to_tss=48 |
|end=74887879 | |end=74887879 | ||
| + | |end_of_center_position=74887874 | ||
|entrez_id=140803 | |entrez_id=140803 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=CHAK2 | + | |gene_alias=CHAK2{{!}}HMGX{{!}}HOMG{{!}}HOMG1{{!}}HSH |
|gene_description=transient receptor potential cation channel subfamily M member 6 | |gene_description=transient receptor potential cation channel subfamily M member 6 | ||
|gene_id=140803 | |gene_id=140803 | ||
| Line 22: | Line 23: | ||
|hgnc_mgi_id=HGNC:17995 | |hgnc_mgi_id=HGNC:17995 | ||
|nearest_ensembl=ENSG00000119121 | |nearest_ensembl=ENSG00000119121 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_017662 |
|nearest_refseq=NM_017662 | |nearest_refseq=NM_017662 | ||
|nearest_unigene=Hs.272225 | |nearest_unigene=Hs.272225 | ||
| − | |num_trans= | + | |num_trans=140803 |
|species=human | |species=human | ||
|start=74887867 | |start=74887867 | ||
| + | |start_of_center_position=74887873 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-81(GGCTGTAAAAGG,-,0.00) |
|transcript_name=AF448232 BC156137 | |transcript_name=AF448232 BC156137 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 17:56, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 74887873 |
|---|---|
| End of the center position in the TSS region: | 74887874 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF448232 BC156137 |
|---|---|
| Distance: | 12 |
| Num_trans: | 140803 |
| All_trans: | HGNC:17995 |
TATA-Box annotation
| Distance to TSS: | 48 |
|---|---|
| Nearest PromoterID: | NM_017662 |
| Entrez ID: | 140803 |
| Nearest Unigene: | Hs.272225 |
| Nearest Refseq: | NM_017662 |
| Nearest Ensembl: | ENSG00000119121 |
| Gene Name: | transient receptor potential cation channel subfamily M member 6 |
| Gene Alias: | CHAK2|HMGX|HOMG|HOMG1|HSH |
| Gene Description: | transient receptor potential cation channel subfamily M member 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -81(GGCTGTAAAAGG,-,0.00) |
