Difference between revisions of "TSS:Hg 101020.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|HOMG1= | |HOMG1= | ||
|HSH= | |HSH= | ||
| − | |all_trans= | + | |all_trans=HGNC:17995 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=74887926 | |end=74887926 | ||
| + | |end_of_center_position=74887921 | ||
|entrez_id=140803 | |entrez_id=140803 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=CHAK2 | + | |gene_alias=CHAK2{{!}}HMGX{{!}}HOMG{{!}}HOMG1{{!}}HSH |
|gene_description=transient receptor potential cation channel subfamily M member 6 | |gene_description=transient receptor potential cation channel subfamily M member 6 | ||
|gene_id=140803 | |gene_id=140803 | ||
| Line 25: | Line 26: | ||
|nearest_refseq=NM_017662 | |nearest_refseq=NM_017662 | ||
|nearest_unigene=Hs.272225 | |nearest_unigene=Hs.272225 | ||
| − | |num_trans= | + | |num_trans=140803 |
|species=human | |species=human | ||
|start=74887915 | |start=74887915 | ||
| + | |start_of_center_position=74887920 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-88(TCTTTTCTAGGC,+,0.00),-33(GGCTGTAAAAGG,-,0.00) |
| − | |transcript_name=AY333282 AY333285 AY333286 AY333287 AY333288 | + | |transcript_name=ENST00000360774.6 AY333282 AY333285 AY333286 AY333287 AY333288 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101020.1 | |tss_id=hg_101020.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9BX84 |
}} | }} | ||
Latest revision as of 17:56, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 74887920 |
|---|---|
| End of the center position in the TSS region: | 74887921 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000360774.6 AY333282 AY333285 AY333286 AY333287 AY333288 |
|---|---|
| Distance: | 0 |
| Num_trans: | 140803 |
| All_trans: | HGNC:17995 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_017662 |
| Entrez ID: | 140803 |
| Nearest Unigene: | Hs.272225 |
| Nearest Refseq: | NM_017662 |
| Nearest Ensembl: | ENSG00000119121 |
| Gene Name: | transient receptor potential cation channel subfamily M member 6 |
| Gene Alias: | CHAK2|HMGX|HOMG|HOMG1|HSH |
| Gene Description: | transient receptor potential cation channel subfamily M member 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -88(TCTTTTCTAGGC,+,0.00),-33(GGCTGTAAAAGG,-,0.00) |
