Difference between revisions of "TSS:Hg 101440.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:3154 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=47 | |distance_to_tss=47 | ||
|end=92536058 | |end=92536058 | ||
| + | |end_of_center_position=92536046 | ||
|entrez_id=1842 | |entrez_id=1842 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:3154 | |hgnc_mgi_id=HGNC:3154 | ||
|nearest_ensembl=ENSG00000106823 | |nearest_ensembl=ENSG00000106823 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001393 |
|nearest_refseq=NM_001393 | |nearest_refseq=NM_001393 | ||
|nearest_unigene=Hs.117060 | |nearest_unigene=Hs.117060 | ||
| − | |num_trans= | + | |num_trans=1842 |
|species=human | |species=human | ||
|start=92536032 | |start=92536032 | ||
| + | |start_of_center_position=92536045 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=26(GTTTTTAAAGAA,+,0.00) |
| − | |transcript_name=ENST00000344604.9 ENST00000375540.5 | + | |transcript_name=ENST00000344604.9 ENST00000375540.5 BX537976 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101440.1 | |tss_id=hg_101440.1 | ||
Latest revision as of 18:05, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 92536045 |
|---|---|
| End of the center position in the TSS region: | 92536046 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000344604.9 ENST00000375540.5 BX537976 |
|---|---|
| Distance: | 0 |
| Num_trans: | 1842 |
| All_trans: | HGNC:3154 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NM_001393 |
| Entrez ID: | 1842 |
| Nearest Unigene: | Hs.117060 |
| Nearest Refseq: | NM_001393 |
| Nearest Ensembl: | ENSG00000106823 |
| Gene Name: | extracellular matrix protein 2 |
| Gene Alias: | - |
| Gene Description: | extracellular matrix protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 26(GTTTTTAAAGAA,+,0.00) |
