Difference between revisions of "TSS:Hg 101577.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 6: | Line 6: | ||
|PTCH= | |PTCH= | ||
|PTCH11= | |PTCH11= | ||
| − | |all_trans= | + | |all_trans=HGNC:9585 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 12: | Line 12: | ||
|distance_to_tss=41 | |distance_to_tss=41 | ||
|end=95516931 | |end=95516931 | ||
| + | |end_of_center_position=95516924 | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS{{!}}NBCCS{{!}}PTC{{!}}PTC1{{!}}PTCH |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| Line 24: | Line 25: | ||
|hgnc_mgi_id=HGNC:9585 | |hgnc_mgi_id=HGNC:9585 | ||
|nearest_ensembl=ENSG00000185920 | |nearest_ensembl=ENSG00000185920 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001083603 |
|nearest_refseq=NM_000264 | |nearest_refseq=NM_000264 | ||
|nearest_unigene=Hs.494538 | |nearest_unigene=Hs.494538 | ||
| − | |num_trans= | + | |num_trans=5727 |
|species=human | |species=human | ||
|start=95516916 | |start=95516916 | ||
| + | |start_of_center_position=95516923 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000437951.5 ENST00000375274.6 | + | |transcript_name=ENST00000437951.5 ENST00000375274.6 AB189436 AB189437 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101577.1 | |tss_id=hg_101577.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q13635 | + | |uniprot_id=Q13635 |
}} | }} | ||
Latest revision as of 18:08, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 95516923 |
|---|---|
| End of the center position in the TSS region: | 95516924 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000437951.5 ENST00000375274.6 AB189436 AB189437 |
|---|---|
| Distance: | -34 |
| Num_trans: | 5727 |
| All_trans: | HGNC:9585 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NM_001083603 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | patched 1 |
| Gene Alias: | BCNS|NBCCS|PTC|PTC1|PTCH |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
