Difference between revisions of "TSS:Hg 101617.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=-16911 |entrez_id=57653 |gc_percent=0.656716 |gene_alias=- |gene_description=LOC100499484-C9orf174 readthrough |gene_name=LOC10...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:43601 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=275 | ||
|distance_to_tss=-16911 | |distance_to_tss=-16911 | ||
| + | |end=97221521 | ||
| + | |end_of_center_position=97221516 | ||
|entrez_id=57653 | |entrez_id=57653 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=- | + | |gene_alias=LOC100499484-C9ORF174 |
| − | |gene_description= | + | |gene_description=SUGT1P4-STRA6LP-CCDC180 readthrough |
| − | |gene_name= | + | |gene_id= |
| + | |gene_name=ankyrin repeat domain 18C, pseudogene | ||
| + | |gene_source=HGNC:43601 | ||
| + | |gene_symbol=ANKRD18CP | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:43601 | ||
|nearest_ensembl=ENSG00000255036 | |nearest_ensembl=ENSG00000255036 | ||
|nearest_promoter_id=NR_036527 | |nearest_promoter_id=NR_036527 | ||
|nearest_refseq=NR_036527 | |nearest_refseq=NR_036527 | ||
|nearest_unigene=Hs.435629 | |nearest_unigene=Hs.435629 | ||
| + | |num_trans= | ||
| + | |species=human | ||
| + | |start=97221509 | ||
| + | |start_of_center_position=97221515 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000354752.5 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101617.1 | |tss_id=hg_101617.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:09, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97221515 |
|---|---|
| End of the center position in the TSS region: | 97221516 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000354752.5 |
|---|---|
| Distance: | 275 |
| Num_trans: | |
| All_trans: | HGNC:43601 |
TATA-Box annotation
| Distance to TSS: | -16911 |
|---|---|
| Nearest PromoterID: | NR_036527 |
| Entrez ID: | 57653 |
| Nearest Unigene: | Hs.435629 |
| Nearest Refseq: | NR_036527 |
| Nearest Ensembl: | ENSG00000255036 |
| Gene Name: | ankyrin repeat domain 18C, pseudogene |
| Gene Alias: | LOC100499484-C9ORF174 |
| Gene Description: | SUGT1P4-STRA6LP-CCDC180 readthrough |
| Gene Type: | ncRNA |
| CpG%: | 0.115 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
