Difference between revisions of "TSS:Hg 101762.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:28180 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=-1 | |distance=-1 | ||
| − | |distance_to_tss= | + | |distance_to_tss=96 |
|end=101487116 | |end=101487116 | ||
|end_of_center_position=101487077 | |end_of_center_position=101487077 | ||
| Line 12: | Line 12: | ||
|gene_description=transmembrane protein 246 | |gene_description=transmembrane protein 246 | ||
|gene_id=84302 | |gene_id=84302 | ||
| − | |gene_name= | + | |gene_name=post-GPI attachment to proteins GalNAc transferase 4 |
|gene_source=HGNC:28180 | |gene_source=HGNC:28180 | ||
| − | |gene_symbol= | + | |gene_symbol=PGAP4 |
|gene_synonyms=MGC12992 | |gene_synonyms=MGC12992 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28180 | |hgnc_mgi_id=HGNC:28180 | ||
|nearest_ensembl=ENSG00000165152 | |nearest_ensembl=ENSG00000165152 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_032342 |
|nearest_refseq=NM_032342 | |nearest_refseq=NM_032342 | ||
|nearest_unigene=Hs.388742 | |nearest_unigene=Hs.388742 | ||
| − | |num_trans= | + | |num_trans=84302 |
|species=human | |species=human | ||
|start=101487037 | |start=101487037 | ||
|start_of_center_position=101487076 | |start_of_center_position=101487076 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000374847.5 | + | |transcript_name=ENST00000374847.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101762.1 | |tss_id=hg_101762.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R188 | + | |uniprot_id=A0A024R188 |
}} | }} | ||
Latest revision as of 18:12, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 101487076 |
|---|---|
| End of the center position in the TSS region: | 101487077 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374847.5 |
|---|---|
| Distance: | -1 |
| Num_trans: | 84302 |
| All_trans: | HGNC:28180 |
TATA-Box annotation
| Distance to TSS: | 96 |
|---|---|
| Nearest PromoterID: | NM_032342 |
| Entrez ID: | 84302 |
| Nearest Unigene: | Hs.388742 |
| Nearest Refseq: | NM_032342 |
| Nearest Ensembl: | ENSG00000165152 |
| Gene Name: | post-GPI attachment to proteins GalNAc transferase 4 |
| Gene Alias: | C9orf125 |
| Gene Description: | transmembrane protein 246 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
