Difference between revisions of "TSS:Hg 101902.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |PTPH1= | ||
| + | |all_trans=NM_001145372:38 NM_001145371:38 AK316118:41 AK296388:41 AK296265:184 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance_to_tss= | + | |distance=38 |
| + | |distance_to_tss=-40 | ||
| + | |end=109429014 | ||
| + | |end_of_center_position=109429012 | ||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.482587 | |gc_percent=0.482587 | ||
| − | |gene_alias=PTP-H1 | + | |gene_alias=PTP-H1{{!}}PTPH1 |
| − | |gene_description= | + | |gene_description=protein tyrosine phosphatase non-receptor type 3 |
| − | |gene_name=PTPN3 | + | |gene_id=5774 |
| + | |gene_name=protein tyrosine phosphatase non-receptor type 3 | ||
| + | |gene_source=HGNC:9655 | ||
| + | |gene_symbol=PTPN3 | ||
| + | |gene_synonyms=PTPH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9655 | ||
|nearest_ensembl=ENSG00000070159 | |nearest_ensembl=ENSG00000070159 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001145372 |
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
| − | |tata_box= | + | |num_trans=5 |
| + | |species=human | ||
| + | |start=109429009 | ||
| + | |start_of_center_position=109429011 | ||
| + | |strand=- | ||
| + | |tata_box=89(TTATTTAAAAGC,-,0.00) | ||
| + | |transcript_name=NM_001145371.2 NM_001145372.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101902.1 | |tss_id=hg_101902.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8N4S3 | ||
}} | }} | ||
Latest revision as of 18:15, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 109429011 |
|---|---|
| End of the center position in the TSS region: | 109429012 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001145371.2 NM_001145372.2 |
|---|---|
| Distance: | 38 |
| Num_trans: | 5 |
| All_trans: | NM_001145372:38 NM_001145371:38 AK316118:41 AK296388:41 AK296265:184 |
TATA-Box annotation
| Distance to TSS: | -40 |
|---|---|
| Nearest PromoterID: | NM_001145372 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Alias: | PTP-H1|PTPH1 |
| Gene Description: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 89(TTATTTAAAAGC,-,0.00) |
