Difference between revisions of "TSS:Hg 101940.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CCP22= | ||
| + | |POLYDOM= | ||
| + | |SEL-OB= | ||
| + | |SELOB= | ||
| + | |all_trans=HGNC:15985 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance_to_tss=- | + | |distance=121 |
| + | |distance_to_tss=-270 | ||
| + | |end=110580022 | ||
| + | |end_of_center_position=110580012 | ||
|entrez_id=79987 | |entrez_id=79987 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=C9orf13 | + | |gene_alias=C9orf13{{!}}CCP22{{!}}POLYDOM{{!}}SEL-OB{{!}}SELOB |
| − | |gene_description= | + | |gene_description=sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 |
| − | |gene_name=SVEP1 | + | |gene_id=79987 |
| + | |gene_name=sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 | ||
| + | |gene_source=HGNC:15985 | ||
| + | |gene_symbol=SVEP1 | ||
| + | |gene_synonyms=FLJ13529 POLYDOM bA427L11.3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15985 | ||
|nearest_ensembl=ENSG00000165124 | |nearest_ensembl=ENSG00000165124 | ||
|nearest_promoter_id=NM_153366 | |nearest_promoter_id=NM_153366 | ||
|nearest_refseq=NM_153366 | |nearest_refseq=NM_153366 | ||
|nearest_unigene=Hs.522334 | |nearest_unigene=Hs.522334 | ||
| + | |num_trans=79987 | ||
| + | |species=human | ||
| + | |start=110580000 | ||
| + | |start_of_center_position=110580011 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000401783.6 ENST00000374461.1 BC030816 | ||
| + | |tss_classification=no | ||
|tss_id=hg_101940.1 | |tss_id=hg_101940.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0A0MSD0 Q4LDE5 | ||
}} | }} | ||
Latest revision as of 18:16, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 110580011 |
|---|---|
| End of the center position in the TSS region: | 110580012 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000401783.6 ENST00000374461.1 BC030816 |
|---|---|
| Distance: | 121 |
| Num_trans: | 79987 |
| All_trans: | HGNC:15985 |
TATA-Box annotation
| Distance to TSS: | -270 |
|---|---|
| Nearest PromoterID: | NM_153366 |
| Entrez ID: | 79987 |
| Nearest Unigene: | Hs.522334 |
| Nearest Refseq: | NM_153366 |
| Nearest Ensembl: | ENSG00000165124 |
| Gene Name: | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 |
| Gene Alias: | C9orf13|CCP22|POLYDOM|SEL-OB|SELOB |
| Gene Description: | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
