Difference between revisions of "TSS:Hg 101976.1"
From referenceTSS
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| Line 5: | Line 5: | ||
|Mrec1.3= | |Mrec1.3= | ||
|VZG1= | |VZG1= | ||
| − | |all_trans=AK298590:68 ENST00000441240 | + | |all_trans=NM_001351400:29 NM_001351401:29 NM_001351402:29 NM_001351404:29 NM_001351403:29 NM_001351405:29 AK298590:68 NM_001351399:-214 NM_001351398:-214 NM_001351397:-214 NM_001351414:299 NM_001351413:299 NM_001351412:299 NM_001351411:299 NM_001351410:299 NM_001351409:299 NM_001351408:299 NM_001351407:299 NM_001351406:299 ENST00000441240.1:311 AK290287:-462 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=29 |
| − | |distance_to_tss=- | + | |distance_to_tss=-36 |
|edg-2= | |edg-2= | ||
|end=111038784 | |end=111038784 | ||
| Line 15: | Line 15: | ||
|entrez_id=1902 | |entrez_id=1902 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=EDG2 | + | |gene_alias=EDG2{{!}}GPR26{{!}}Gpcr26{{!}}LPA1{{!}}Mrec1.3{{!}}VZG1{{!}}edg-2{{!}}rec.1.3{{!}}vzg-1 |
|gene_description=lysophosphatidic acid receptor 1 | |gene_description=lysophosphatidic acid receptor 1 | ||
|gene_id=1902 | |gene_id=1902 | ||
| Line 21: | Line 21: | ||
|gene_source=HGNC:3166 | |gene_source=HGNC:3166 | ||
|gene_symbol=LPAR1 | |gene_symbol=LPAR1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=Gpcr26 LPA1 Mrec1.3 edg-2 rec.1.3 vzg-1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:3166 | |hgnc_mgi_id=HGNC:3166 | ||
|nearest_ensembl=ENSG00000198121 | |nearest_ensembl=ENSG00000198121 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351400 |
|nearest_refseq=NM_001401 | |nearest_refseq=NM_001401 | ||
|nearest_unigene=Hs.126667 | |nearest_unigene=Hs.126667 | ||
| − | |num_trans= | + | |num_trans=21 |
|rec.1.3= | |rec.1.3= | ||
|species=human | |species=human | ||
| Line 34: | Line 34: | ||
|start_of_center_position=111038776 | |start_of_center_position=111038776 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001351405.2 NM_001387477.1 NM_001387484.1 NM_001387479.1 NM_001351401.2 NM_001351404.2 NM_001387482.1 NM_001387483.1 NM_001351400.2 NM_001387478.1 NM_001351402.2 NM_001387480.1 NM_001387486.1 NM_001387481.1 NM_001351403.2 NM_001387485.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101976.1 | |tss_id=hg_101976.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
|vzg-1= | |vzg-1= | ||
}} | }} | ||
Latest revision as of 18:17, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 111038776 |
|---|---|
| End of the center position in the TSS region: | 111038777 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001351405.2 NM_001387477.1 NM_001387484.1 NM_001387479.1 NM_001351401.2 NM_001351404.2 NM_001387482.1 NM_001387483.1 NM_001351400.2 NM_001387478.1 NM_001351402.2 NM_001387480.1 NM_001387486.1 NM_001387481.1 NM_001351403.2 NM_001387485.1 |
|---|---|
| Distance: | 29 |
| Num_trans: | 21 |
| All_trans: | NM_001351400:29 NM_001351401:29 NM_001351402:29 NM_001351404:29 NM_001351403:29 NM_001351405:29 AK298590:68 NM_001351399:-214 NM_001351398:-214 NM_001351397:-214 NM_001351414:299 NM_001351413:299 NM_001351412:299 NM_001351411:299 NM_001351410:299 NM_001351409:299 NM_001351408:299 NM_001351407:299 NM_001351406:299 ENST00000441240.1:311 AK290287:-462 |
TATA-Box annotation
| Distance to TSS: | -36 |
|---|---|
| Nearest PromoterID: | NM_001351400 |
| Entrez ID: | 1902 |
| Nearest Unigene: | Hs.126667 |
| Nearest Refseq: | NM_001401 |
| Nearest Ensembl: | ENSG00000198121 |
| Gene Name: | lysophosphatidic acid receptor 1 |
| Gene Alias: | EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 |
| Gene Description: | lysophosphatidic acid receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
