Difference between revisions of "TSS:Hg 102057.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:25413 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=175 |
|distance_to_tss=-180 | |distance_to_tss=-180 | ||
|end=112175482 | |end=112175482 | ||
| + | |end_of_center_position=112175477 | ||
|entrez_id=64420 | |entrez_id=64420 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:25413 | |hgnc_mgi_id=HGNC:25413 | ||
|nearest_ensembl=ENSG00000106868 | |nearest_ensembl=ENSG00000106868 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_022486 |
|nearest_refseq=NM_022486 | |nearest_refseq=NM_022486 | ||
|nearest_unigene=Hs.494827 | |nearest_unigene=Hs.494827 | ||
| − | |num_trans= | + | |num_trans=64420 |
|species=human | |species=human | ||
|start=112175471 | |start=112175471 | ||
| + | |start_of_center_position=112175476 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000374270.7 | + | |transcript_name=ENST00000374270.8 ENST00000374263.7 AK292868 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102057.1 | |tss_id=hg_102057.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q6UWL2 | + | |uniprot_id=F8WAQ1 Q6UWL2 |
}} | }} | ||
Latest revision as of 18:18, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 112175476 |
|---|---|
| End of the center position in the TSS region: | 112175477 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374270.8 ENST00000374263.7 AK292868 |
|---|---|
| Distance: | 175 |
| Num_trans: | 64420 |
| All_trans: | HGNC:25413 |
TATA-Box annotation
| Distance to TSS: | -180 |
|---|---|
| Nearest PromoterID: | NM_022486 |
| Entrez ID: | 64420 |
| Nearest Unigene: | Hs.494827 |
| Nearest Refseq: | NM_022486 |
| Nearest Ensembl: | ENSG00000106868 |
| Gene Name: | sushi domain containing 1 |
| Gene Alias: | - |
| Gene Description: | sushi domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
