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Difference between revisions of "TSS:Hg 102167.1"

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Line 4: Line 4:
 
|USH2D=
 
|USH2D=
 
|WI=
 
|WI=
|all_trans=NM_001173425:6 NM_015404:6 BC142614:6 ENST00000374057.3:12 uc004bjb.4:12 AK056190:12 BC142684:31 BC014524:37 BC136416:257 ENST00000362057.3:492 uc004biz.5:492 AB040959:492
+
|all_trans=HGNC:16361
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.13
 
|cpg_percent=0.13
|distance=6
+
|distance=0
|distance_to_tss=-40
+
|distance_to_tss=-23
 
|end=114505530
 
|end=114505530
 +
|end_of_center_position=114505496
 
|entrez_id=25861
 
|entrez_id=25861
 
|gc_percent=0.756219
 
|gc_percent=0.756219
|gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI
+
|gene_alias=CIP98{{!}}DFNB31{{!}}PDZD7B{{!}}USH2D{{!}}WI
 
|gene_description=whirlin
 
|gene_description=whirlin
 
|gene_id=25861
 
|gene_id=25861
|gene_name="deafness, autosomal recessive 31"
+
|gene_name=whirlin
 
|gene_source=HGNC:16361
 
|gene_source=HGNC:16361
|gene_symbol=DFNB31
+
|gene_symbol=WHRN
|gene_synonyms=CIP98 PDZD7B USH2D WHRN
+
|gene_synonyms=CIP98 PDZD7B USH2D
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=HGNC:16361
 
|hgnc_mgi_id=HGNC:16361
 
|nearest_ensembl=ENSG00000095397
 
|nearest_ensembl=ENSG00000095397
|nearest_promoter_id=NM_015404
+
|nearest_promoter_id=NM_001173425
 
|nearest_refseq=NM_015404
 
|nearest_refseq=NM_015404
 
|nearest_unigene=Hs.93836
 
|nearest_unigene=Hs.93836
|num_trans=12
+
|num_trans=25861
 
|species=human
 
|species=human
 
|start=114505461
 
|start=114505461
 +
|start_of_center_position=114505495
 
|strand=-
 
|strand=-
|transcript_name=NM_001173425 NM_015404 BC142614
+
|transcript_name=ENST00000362057.4 ENST00000673697.1
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_102167.1
 
|tss_id=hg_102167.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=Q9P202
+
|uniprot_id=A0A669KBA5 Q9P202
 
}}
 
}}

Latest revision as of 18:21, 19 July 2021

Basic information about the TSS


TSS ID:hg_102167.1
Species:human
Chr:chr9
TSS Classification:yes
Start:114505461
End:114505530
Strand:-
TSS Score:1
Start of the center position in the TSS region:114505495
End of the center position in the TSS region:114505496



Gene and protein annotation


Transcript_name:ENST00000362057.4 ENST00000673697.1
Distance:0
GeneID:25861
HGNC/MGI_ID:HGNC:16361
UniProt_ID:A0A669KBA5 Q9P202
Gene_name:whirlin
Gene_symbol:WHRN
Gene_synonyms:CIP98 PDZD7B USH2D
Gene_source:HGNC:16361



Transcript annotation


Transcript_name:ENST00000362057.4 ENST00000673697.1
Distance:0
Num_trans:25861
All_trans:HGNC:16361



TATA-Box annotation


Distance to TSS:-23
Nearest PromoterID:NM_001173425
Entrez ID:25861
Nearest Unigene:Hs.93836
Nearest Refseq:NM_015404
Nearest Ensembl:ENSG00000095397
Gene Name:whirlin
Gene Alias:CIP98|DFNB31|PDZD7B|USH2D|WI
Gene Description:whirlin
Gene Type:protein-coding
CpG%:0.13
GC%:0.756219
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):