Difference between revisions of "TSS:Hg 102168.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|USH2D= | |USH2D= | ||
|WI= | |WI= | ||
| − | |all_trans= | + | |all_trans=HGNC:16361 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=100 |
| − | |distance_to_tss=- | + | |distance_to_tss=-101 |
|end=114505576 | |end=114505576 | ||
| + | |end_of_center_position=114505575 | ||
|entrez_id=25861 | |entrez_id=25861 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=CIP98 | + | |gene_alias=CIP98{{!}}DFNB31{{!}}PDZD7B{{!}}USH2D{{!}}WI |
|gene_description=whirlin | |gene_description=whirlin | ||
|gene_id=25861 | |gene_id=25861 | ||
| − | |gene_name= | + | |gene_name=whirlin |
|gene_source=HGNC:16361 | |gene_source=HGNC:16361 | ||
| − | |gene_symbol= | + | |gene_symbol=WHRN |
| − | |gene_synonyms=CIP98 PDZD7B USH2D | + | |gene_synonyms=CIP98 PDZD7B USH2D |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16361 | |hgnc_mgi_id=HGNC:16361 | ||
|nearest_ensembl=ENSG00000095397 | |nearest_ensembl=ENSG00000095397 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001173425 |
|nearest_refseq=NM_015404 | |nearest_refseq=NM_015404 | ||
|nearest_unigene=Hs.93836 | |nearest_unigene=Hs.93836 | ||
| − | |num_trans= | + | |num_trans=25861 |
|species=human | |species=human | ||
|start=114505572 | |start=114505572 | ||
| + | |start_of_center_position=114505574 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000362057.4 ENST00000673697.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102168.1 | |tss_id=hg_102168.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q9P202 | + | |uniprot_id=A0A669KBA5 Q9P202 |
}} | }} | ||
Latest revision as of 18:21, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 114505574 |
|---|---|
| End of the center position in the TSS region: | 114505575 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000362057.4 ENST00000673697.1 |
|---|---|
| Distance: | 100 |
| Num_trans: | 25861 |
| All_trans: | HGNC:16361 |
TATA-Box annotation
| Distance to TSS: | -101 |
|---|---|
| Nearest PromoterID: | NM_001173425 |
| Entrez ID: | 25861 |
| Nearest Unigene: | Hs.93836 |
| Nearest Refseq: | NM_015404 |
| Nearest Ensembl: | ENSG00000095397 |
| Gene Name: | whirlin |
| Gene Alias: | CIP98|DFNB31|PDZD7B|USH2D|WI |
| Gene Description: | whirlin |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
