Difference between revisions of "TSS:Hg 102328.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|MGC:10353= | |MGC:10353= | ||
| − | |all_trans=ENST00000540010.1:-89 NM_001190945 | + | |all_trans=ENST00000540010.1:-89 NM_001190945:-89 AK315476:-117 AL832989:235 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance=- | + | |distance=-87 |
|distance_to_tss=129 | |distance_to_tss=129 | ||
|end=120929084 | |end=120929084 | ||
| Line 10: | Line 10: | ||
|entrez_id=7185 | |entrez_id=7185 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=EBI6 | + | |gene_alias=EBI6{{!}}MGC:10353 |
|gene_description=TNF receptor associated factor 1 | |gene_description=TNF receptor associated factor 1 | ||
|gene_id=7185 | |gene_id=7185 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_005658 | |nearest_refseq=NM_005658 | ||
|nearest_unigene=Hs.531251 | |nearest_unigene=Hs.531251 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=120929003 | |start=120929003 | ||
|start_of_center_position=120929043 | |start_of_center_position=120929043 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001190945.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102328.1 | |tss_id=hg_102328.1 | ||
Latest revision as of 18:24, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 120929043 |
|---|---|
| End of the center position in the TSS region: | 120929044 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001190945.2 |
|---|---|
| Distance: | -87 |
| Num_trans: | 4 |
| All_trans: | ENST00000540010.1:-89 NM_001190945:-89 AK315476:-117 AL832989:235 |
TATA-Box annotation
| Distance to TSS: | 129 |
|---|---|
| Nearest PromoterID: | NM_001190945 |
| Entrez ID: | 7185 |
| Nearest Unigene: | Hs.531251 |
| Nearest Refseq: | NM_005658 |
| Nearest Ensembl: | ENSG00000056558 |
| Gene Name: | TNF receptor associated factor 1 |
| Gene Alias: | EBI6|MGC:10353 |
| Gene Description: | TNF receptor associated factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
