Difference between revisions of "TSS:Hg 102380.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000474723.5 | + | |all_trans=NM_001139442:8 NM_194252:8 ENST00000474723.5:32 AK125178:32 BC169335:-78 ENST00000321582.10:-261 ENST00000373776.5:-261 AF521886:-261 LF347002:-420 MA582579:-420 |
|bA244O19.1= | |bA244O19.1= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=8 |
|distance_to_tss=276 | |distance_to_tss=276 | ||
|end=122093345 | |end=122093345 | ||
| + | |end_of_center_position=122093331 | ||
|entrez_id=158135 | |entrez_id=158135 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=C9orf20 | + | |gene_alias=C9orf20{{!}}bA244O19.1 |
|gene_description=tubulin tyrosine ligase like 11 | |gene_description=tubulin tyrosine ligase like 11 | ||
|gene_id=158135 | |gene_id=158135 | ||
| − | |gene_name=tubulin tyrosine ligase | + | |gene_name=tubulin tyrosine ligase like 11 |
|gene_source=HGNC:18113 | |gene_source=HGNC:18113 | ||
|gene_symbol=TTLL11 | |gene_symbol=TTLL11 | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_194252 | |nearest_refseq=NM_194252 | ||
|nearest_unigene=Hs.438937 | |nearest_unigene=Hs.438937 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=122093315 | |start=122093315 | ||
| + | |start_of_center_position=122093330 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001139442.2 NM_001386831.1 NM_194252.3 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102380.1 | |tss_id=hg_102380.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8NHH1 |
}} | }} | ||
Latest revision as of 18:26, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 122093330 |
|---|---|
| End of the center position in the TSS region: | 122093331 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001139442.2 NM_001386831.1 NM_194252.3 |
|---|---|
| Distance: | 8 |
| Num_trans: | 10 |
| All_trans: | NM_001139442:8 NM_194252:8 ENST00000474723.5:32 AK125178:32 BC169335:-78 ENST00000321582.10:-261 ENST00000373776.5:-261 AF521886:-261 LF347002:-420 MA582579:-420 |
TATA-Box annotation
| Distance to TSS: | 276 |
|---|---|
| Nearest PromoterID: | NM_001139442 |
| Entrez ID: | 158135 |
| Nearest Unigene: | Hs.438937 |
| Nearest Refseq: | NM_194252 |
| Nearest Ensembl: | ENSG00000175764 |
| Gene Name: | tubulin tyrosine ligase like 11 |
| Gene Alias: | C9orf20|bA244O19.1 |
| Gene Description: | tubulin tyrosine ligase like 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
