Difference between revisions of "TSS:Hg 102400.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RNF164= | |RNF164= | ||
| − | |all_trans= | + | |all_trans=HGNC:21461 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-10 |
|end=122905399 | |end=122905399 | ||
|end_of_center_position=122905370 | |end_of_center_position=122905370 | ||
|entrez_id=54542 | |entrez_id=54542 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=MNAB | + | |gene_alias=MNAB{{!}}RNF164 |
|gene_description=ring finger and CCCH-type domains 2 | |gene_description=ring finger and CCCH-type domains 2 | ||
|gene_id=54542 | |gene_id=54542 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:21461 | |hgnc_mgi_id=HGNC:21461 | ||
|nearest_ensembl=ENSG00000056586 | |nearest_ensembl=ENSG00000056586 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001354478 |
|nearest_refseq=NM_018835 | |nearest_refseq=NM_018835 | ||
|nearest_unigene=Hs.533499 | |nearest_unigene=Hs.533499 | ||
| − | |num_trans= | + | |num_trans=54542 |
|species=human | |species=human | ||
|start=122905339 | |start=122905339 | ||
|start_of_center_position=122905369 | |start_of_center_position=122905369 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000423239.6 | + | |transcript_name=ENST00000357244.7 ENST00000423239.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102400.1 | |tss_id=hg_102400.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q9HBD1 | + | |uniprot_id=A0A024R899 Q9HBD1 |
}} | }} | ||
Latest revision as of 18:26, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 122905369 |
|---|---|
| End of the center position in the TSS region: | 122905370 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000357244.7 ENST00000423239.6 |
|---|---|
| Distance: | 0 |
| Num_trans: | 54542 |
| All_trans: | HGNC:21461 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_001354478 |
| Entrez ID: | 54542 |
| Nearest Unigene: | Hs.533499 |
| Nearest Refseq: | NM_018835 |
| Nearest Ensembl: | ENSG00000056586 |
| Gene Name: | ring finger and CCCH-type domains 2 |
| Gene Alias: | MNAB|RNF164 |
| Gene Description: | ring finger and CCCH-type domains 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
