Difference between revisions of "TSS:Hg 102448.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 4: | Line 4: | ||
|NR61= | |NR61= | ||
|RTR= | |RTR= | ||
| − | |all_trans= | + | |all_trans=HGNC:7985 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-9 |
|end=124771336 | |end=124771336 | ||
| + | |end_of_center_position=124771320 | ||
|entrez_id=2649 | |entrez_id=2649 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=CT150 | + | |gene_alias=CT150{{!}}GCNF{{!}}GCNF1{{!}}NR61{{!}}RTR{{!}}hGCNF{{!}}hRTR |
|gene_description=nuclear receptor subfamily 6 group A member 1 | |gene_description=nuclear receptor subfamily 6 group A member 1 | ||
|gene_id=2649 | |gene_id=2649 | ||
| Line 27: | Line 28: | ||
|nearest_refseq=NM_001489 | |nearest_refseq=NM_001489 | ||
|nearest_unigene=Hs.20131 | |nearest_unigene=Hs.20131 | ||
| − | |num_trans= | + | |num_trans=2649 |
|species=human | |species=human | ||
|start=124771303 | |start=124771303 | ||
| + | |start_of_center_position=124771319 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000416460.6 | + | |transcript_name=ENST00000487099.7 ENST00000416460.6 BC030600 BC042395 BC042406 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102448.1 | |tss_id=hg_102448.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q15406 | + | |uniprot_id=F1D8S0 Q15406 |
}} | }} | ||
Latest revision as of 18:27, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 124771319 |
|---|---|
| End of the center position in the TSS region: | 124771320 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000487099.7 ENST00000416460.6 BC030600 BC042395 BC042406 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2649 |
| All_trans: | HGNC:7985 |
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_033334 |
| Entrez ID: | 2649 |
| Nearest Unigene: | Hs.20131 |
| Nearest Refseq: | NM_001489 |
| Nearest Ensembl: | ENSG00000148200 |
| Gene Name: | nuclear receptor subfamily 6 group A member 1 |
| Gene Alias: | CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR |
| Gene Description: | nuclear receptor subfamily 6 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
