Difference between revisions of "TSS:Hg 10249.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:16913 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=27 | |distance=27 | ||
| − | |distance_to_tss= | + | |distance_to_tss=17000 |
|end=9893275 | |end=9893275 | ||
| + | |end_of_center_position=9893270 | ||
|entrez_id=56998 | |entrez_id=56998 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_020248 | |nearest_refseq=NM_020248 | ||
|nearest_unigene=Hs.463759 | |nearest_unigene=Hs.463759 | ||
| − | |num_trans= | + | |num_trans=56998 |
|species=human | |species=human | ||
|start=9893263 | |start=9893263 | ||
| + | |start_of_center_position=9893269 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000377258.5 | + | |transcript_name=ENST00000377258.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10249.1 | |tss_id=hg_10249.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R4D7 | + | |uniprot_id=A0A024R4D7 |
}} | }} | ||
Latest revision as of 18:28, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9893269 |
|---|---|
| End of the center position in the TSS region: | 9893270 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000377258.5 |
|---|---|
| Distance: | 27 |
| Num_trans: | 56998 |
| All_trans: | HGNC:16913 |
TATA-Box annotation
| Distance to TSS: | 17000 |
|---|---|
| Nearest PromoterID: | NM_020248 |
| Entrez ID: | 56998 |
| Nearest Unigene: | Hs.463759 |
| Nearest Refseq: | NM_020248 |
| Nearest Ensembl: | ENSG00000178585 |
| Gene Name: | catenin beta interacting protein 1 |
| Gene Alias: | ICAT |
| Gene Description: | catenin beta interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
