Difference between revisions of "TSS:Hg 102559.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |PTH1= | ||
| + | |all_trans=HGNC:27039 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance_to_tss= | + | |distance=0 |
| + | |distance_to_tss=5 | ||
| + | |end=127715682 | ||
| + | |end_of_center_position=127715658 | ||
|entrez_id=138428 | |entrez_id=138428 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=C9orf115 | + | |gene_alias=C9orf115{{!}}PTH1 |
|gene_description=peptidyl-tRNA hydrolase 1 homolog | |gene_description=peptidyl-tRNA hydrolase 1 homolog | ||
| − | |gene_name=PTRH1 | + | |gene_id=138428 |
| + | |gene_name=peptidyl-tRNA hydrolase 1 homolog | ||
| + | |gene_source=HGNC:27039 | ||
| + | |gene_symbol=PTRH1 | ||
| + | |gene_synonyms=PTH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27039 | ||
|nearest_ensembl=ENSG00000187024 | |nearest_ensembl=ENSG00000187024 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001002913 |
|nearest_refseq=NM_001002913 | |nearest_refseq=NM_001002913 | ||
|nearest_unigene=Hs.653265 | |nearest_unigene=Hs.653265 | ||
| + | |num_trans=138428 | ||
| + | |species=human | ||
| + | |start=127715633 | ||
| + | |start_of_center_position=127715657 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000335223.5 ENST00000543175.5 ENST00000416214.1 BC032117 BC047012 HQ257888 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102559.1 | |tss_id=hg_102559.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A096LP34 A0A286YF52 C9J7Z1 Q86Y79 | ||
}} | }} | ||
Latest revision as of 18:29, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 127715657 |
|---|---|
| End of the center position in the TSS region: | 127715658 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000335223.5 ENST00000543175.5 ENST00000416214.1 BC032117 BC047012 HQ257888 |
|---|---|
| Distance: | 0 |
| Num_trans: | 138428 |
| All_trans: | HGNC:27039 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_001002913 |
| Entrez ID: | 138428 |
| Nearest Unigene: | Hs.653265 |
| Nearest Refseq: | NM_001002913 |
| Nearest Ensembl: | ENSG00000187024 |
| Gene Name: | peptidyl-tRNA hydrolase 1 homolog |
| Gene Alias: | C9orf115|PTH1 |
| Gene Description: | peptidyl-tRNA hydrolase 1 homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
