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Difference between revisions of "TSS:Hg 102561.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000463256.5:0 ENST00000493439.1:0 uc064vww.1:0 uc064vwz.1:0 BC080527:0 AK027677:0 BC100907:0 BC100908:0 BC100909:0 BC100910:0 BC156122:1 BC156918:1 BC160144:1 ENST00000336067.10:-8 uc004brt.5:-8 AK075520:-8 ENST00000373281.8:-10 ENST00000463577.2:-10 uc004brw.5:-10 uc011maj.3:-10 AK055034:-10 ENST00000472723.1:-23 uc064vwv.1:-23 AK092388:-23 ENST00000496460.5:-29 uc064vwx.1:-29 AY358180:-29 BC062340:-30 ENST00000373284.9:-33 uc004brs.5:-33 NM_001134431:-65 NM_001134430:-65 NM_001085347:-65 NM_001252021:-65 NM_130459:-65 NM_001252023:-65 NM_001252018:-65
+
|all_trans=HGNC:11996
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.125
 
|cpg_percent=0.125
 
|distance=0
 
|distance=0
−
|distance_to_tss=72
+
|distance_to_tss=17
 
|end=127735284
 
|end=127735284
 +
|end_of_center_position=127735278
 
|entrez_id=27433
 
|entrez_id=27433
 
|gc_percent=0.746269
 
|gc_percent=0.746269
Line 18: Line 19:
 
|hgnc_mgi_id=HGNC:11996
 
|hgnc_mgi_id=HGNC:11996
 
|nearest_ensembl=ENSG00000160404
 
|nearest_ensembl=ENSG00000160404
−
|nearest_promoter_id=NM_001252021
+
|nearest_promoter_id=NM_001252023
 
|nearest_refseq=NM_130459
 
|nearest_refseq=NM_130459
 
|nearest_unigene=Hs.444106
 
|nearest_unigene=Hs.444106
−
|num_trans=37
+
|num_trans=27433
 
|species=human
 
|species=human
 
|start=127735270
 
|start=127735270
 +
|start_of_center_position=127735277
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000463256.5 ENST00000493439.1 uc064vww.1 uc064vwz.1 BC080527 AK027677 BC100907 BC100908 BC100909 BC100910
+
|transcript_name=ENST00000463256.5 ENST00000493439.1 BC080527 AK027677 BC100907 BC100908 BC100909 BC100910
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_102561.1
 
|tss_id=hg_102561.1

Latest revision as of 18:29, 19 July 2021

Basic information about the TSS

TSS ID:hg_102561.1
Species:human
Chr:chr9
TSS Classification:yes
Start:127735270
End:127735284
Strand:-
TSS Score:1
Start of the center position in the TSS region:127735277
End of the center position in the TSS region:127735278



Gene and protein annotation

Transcript_name:ENST00000463256.5 ENST00000493439.1 BC080527 AK027677 BC100907 BC100908 BC100909 BC100910
Distance:0
GeneID:27433
HGNC/MGI_ID:HGNC:11996
UniProt_ID:Q5JU69
Gene_name:torsin family 2 member A
Gene_symbol:TOR2A
Gene_synonyms:FLJ14771 TORP1
Gene_source:HGNC:11996



Transcript annotation

Transcript_name:ENST00000463256.5 ENST00000493439.1 BC080527 AK027677 BC100907 BC100908 BC100909 BC100910
Distance:0
Num_trans:27433
All_trans:HGNC:11996



TATA-Box annotation

Distance to TSS:17
Nearest PromoterID:NM_001252023
Entrez ID:27433
Nearest Unigene:Hs.444106
Nearest Refseq:NM_130459
Nearest Ensembl:ENSG00000160404
Gene Name:torsin family 2 member A
Gene Alias:TORP1
Gene Description:torsin family 2 member A
Gene Type:protein-coding
CpG%:0.125
GC%:0.746269
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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