Difference between revisions of "TSS:Hg 102575.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 3: | Line 3: | ||
|PRO34088= | |PRO34088= | ||
|SHEP1= | |SHEP1= | ||
| − | |all_trans= | + | |all_trans=HGNC:16884 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=10 |
| − | |distance_to_tss= | + | |distance_to_tss=-61 |
|end=127778734 | |end=127778734 | ||
| + | |end_of_center_position=127778727 | ||
|entrez_id=10044 | |entrez_id=10044 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=CHAT | + | |gene_alias=CHAT{{!}}NSP3{{!}}PRO34088{{!}}SHEP1 |
|gene_description=SH2 domain containing 3C | |gene_description=SH2 domain containing 3C | ||
|gene_id=10044 | |gene_id=10044 | ||
| Line 24: | Line 25: | ||
|nearest_refseq=NM_005489 | |nearest_refseq=NM_005489 | ||
|nearest_unigene=Hs.306412 | |nearest_unigene=Hs.306412 | ||
| − | |num_trans= | + | |num_trans=10044 |
|species=human | |species=human | ||
|start=127778719 | |start=127778719 | ||
| + | |start_of_center_position=127778726 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000468969.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102575.1 | |tss_id=hg_102575.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 18:30, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127778726 |
|---|---|
| End of the center position in the TSS region: | 127778727 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000468969.6 |
|---|---|
| Distance: | 10 |
| Num_trans: | 10044 |
| All_trans: | HGNC:16884 |
TATA-Box annotation
| Distance to TSS: | -61 |
|---|---|
| Nearest PromoterID: | NM_170600 |
| Entrez ID: | 10044 |
| Nearest Unigene: | Hs.306412 |
| Nearest Refseq: | NM_005489 |
| Nearest Ensembl: | ENSG00000095370 |
| Gene Name: | SH2 domain containing 3C |
| Gene Alias: | CHAT|NSP3|PRO34088|SHEP1 |
| Gene Description: | SH2 domain containing 3C |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
