Difference between revisions of "TSS:Hg 102660.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|GBF1= | |GBF1= | ||
|PGES2= | |PGES2= | ||
| − | |all_trans= | + | |all_trans=HGNC:17822 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=38 | |distance=38 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-211 |
|end=128127946 | |end=128127946 | ||
|end_of_center_position=128127941 | |end_of_center_position=128127941 | ||
|entrez_id=80142 | |entrez_id=80142 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=C9orf15 | + | |gene_alias=C9orf15{{!}}GBF-1{{!}}GBF1{{!}}PGES2{{!}}mPGES-2 |
|gene_description=prostaglandin E synthase 2 | |gene_description=prostaglandin E synthase 2 | ||
|gene_id=80142 | |gene_id=80142 | ||
| Line 23: | Line 23: | ||
|mPGES-2= | |mPGES-2= | ||
|nearest_ensembl=ENSG00000148334 | |nearest_ensembl=ENSG00000148334 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_025072 |
|nearest_refseq=NM_025072 | |nearest_refseq=NM_025072 | ||
|nearest_unigene=Hs.495219 | |nearest_unigene=Hs.495219 | ||
| − | |num_trans= | + | |num_trans=80142 |
|species=human | |species=human | ||
|start=128127934 | |start=128127934 | ||
|start_of_center_position=128127940 | |start_of_center_position=128127940 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-89(CCCTTTAGGCGG,+,0.00) |
|transcript_name=BC011613 | |transcript_name=BC011613 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 18:32, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 128127940 |
|---|---|
| End of the center position in the TSS region: | 128127941 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC011613 |
|---|---|
| Distance: | 38 |
| Num_trans: | 80142 |
| All_trans: | HGNC:17822 |
TATA-Box annotation
| Distance to TSS: | -211 |
|---|---|
| Nearest PromoterID: | NM_025072 |
| Entrez ID: | 80142 |
| Nearest Unigene: | Hs.495219 |
| Nearest Refseq: | NM_025072 |
| Nearest Ensembl: | ENSG00000148334 |
| Gene Name: | prostaglandin E synthase 2 |
| Gene Alias: | C9orf15|GBF-1|GBF1|PGES2|mPGES-2 |
| Gene Description: | prostaglandin E synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -89(CCCTTTAGGCGG,+,0.00) |
