Difference between revisions of "TSS:Hg 102686.1"
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{{TSSDetail | {{TSSDetail | ||
|COQ10D7= | |COQ10D7= | ||
| − | |all_trans= | + | |all_trans=HGNC:17170 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=16 |
|end=128322455 | |end=128322455 | ||
|end_of_center_position=128322432 | |end_of_center_position=128322432 | ||
| − | |entrez_id= | + | |entrez_id=26995 |
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
| − | |gene_alias= | + | |gene_alias=CLONE24922 |
| − | |gene_description= | + | |gene_description=TruB pseudouridine synthase family member 2 |
|gene_id=26995 | |gene_id=26995 | ||
| − | |gene_name=TruB pseudouridine | + | |gene_name=TruB pseudouridine synthase family member 2 |
|gene_source=HGNC:17170 | |gene_source=HGNC:17170 | ||
|gene_symbol=TRUB2 | |gene_symbol=TRUB2 | ||
| Line 19: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17170 | |hgnc_mgi_id=HGNC:17170 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000167112 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_015679 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_015679 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.632685 |
| − | |num_trans= | + | |num_trans=26995 |
|species=human | |species=human | ||
|start=128322407 | |start=128322407 | ||
|start_of_center_position=128322431 | |start_of_center_position=128322431 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-100(GACTATAAAATG,-,0.00),63(CGGTCTATAAGC,-,0.00) |
| − | |transcript_name=ENST00000460320 | + | |transcript_name=ENST00000372890.6 ENST00000460320.1 AJ420462 AF131848 AK001956 BC001457 DQ892156 DQ895351 CU674714 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102686.1 | |tss_id=hg_102686.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=O95900 | + | |uniprot_id=A0A024R886 O95900 |
}} | }} | ||
Latest revision as of 18:32, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 128322431 |
|---|---|
| End of the center position in the TSS region: | 128322432 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372890.6 ENST00000460320.1 AJ420462 AF131848 AK001956 BC001457 DQ892156 DQ895351 CU674714 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26995 |
| All_trans: | HGNC:17170 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_015679 |
| Entrez ID: | 26995 |
| Nearest Unigene: | Hs.632685 |
| Nearest Refseq: | NM_015679 |
| Nearest Ensembl: | ENSG00000167112 |
| Gene Name: | TruB pseudouridine synthase family member 2 |
| Gene Alias: | CLONE24922 |
| Gene Description: | TruB pseudouridine synthase family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -100(GACTATAAAATG,-,0.00),63(CGGTCTATAAGC,-,0.00) |
