Difference between revisions of "TSS:Hg 102728.1"
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{{TSSDetail | {{TSSDetail | ||
|CAT1= | |CAT1= | ||
| − | |all_trans= | + | |all_trans=HGNC:2342 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=289 |
|end=129110509 | |end=129110509 | ||
|end_of_center_position=129110504 | |end_of_center_position=129110504 | ||
|entrez_id=1384 | |entrez_id=1384 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=CAT | + | |gene_alias=CAT{{!}}CAT1{{!}}NBIA8 |
|gene_description=carnitine O-acetyltransferase | |gene_description=carnitine O-acetyltransferase | ||
|gene_id=1384 | |gene_id=1384 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:2342 | |hgnc_mgi_id=HGNC:2342 | ||
|nearest_ensembl=ENSG00000095321 | |nearest_ensembl=ENSG00000095321 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001346549 |
|nearest_refseq=NM_000755 | |nearest_refseq=NM_000755 | ||
|nearest_unigene=Hs.12068 | |nearest_unigene=Hs.12068 | ||
| − | |num_trans= | + | |num_trans=1384 |
|species=human | |species=human | ||
|start=129110498 | |start=129110498 | ||
|start_of_center_position=129110503 | |start_of_center_position=129110503 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=X78706 | + | |transcript_name=X78706 BT006801 CU674362 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102728.1 | |tss_id=hg_102728.1 | ||
Latest revision as of 18:33, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 129110503 |
|---|---|
| End of the center position in the TSS region: | 129110504 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | X78706 BT006801 CU674362 |
|---|---|
| Distance: | 0 |
| Num_trans: | 1384 |
| All_trans: | HGNC:2342 |
TATA-Box annotation
| Distance to TSS: | 289 |
|---|---|
| Nearest PromoterID: | NM_001346549 |
| Entrez ID: | 1384 |
| Nearest Unigene: | Hs.12068 |
| Nearest Refseq: | NM_000755 |
| Nearest Ensembl: | ENSG00000095321 |
| Gene Name: | carnitine O-acetyltransferase |
| Gene Alias: | CAT|CAT1|NBIA8 |
| Gene Description: | carnitine O-acetyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
