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Difference between revisions of "TSS:Hg 102769.1"

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{{TSSDetail
 
{{TSSDetail
 
|HSPC220=
 
|HSPC220=
|all_trans=AF218421:0 BC017570:0 BC007664:0 ENST00000461349.5:-5 KJ893985:11 KJ906186:11 CU675747:11 CU676010:11 LF207946:25 MA443523:25 ENST00000372447.7:-26 NM_016520:-26 AK057004:-26 ENST00000492991.5:-32 AF151054:-32 LF346690:42 MA582267:42 LF383687:-44 MA619264:-44 LF370363:492 MA605940:492
+
|all_trans=HGNC:24932
 
|bA409K20.3=
 
|bA409K20.3=
 
|chr=chr9
 
|chr=chr9
Line 24: Line 24:
 
|nearest_refseq=NM_016520
 
|nearest_refseq=NM_016520
 
|nearest_unigene=Hs.278429
 
|nearest_unigene=Hs.278429
|num_trans=21
+
|num_trans=51759
 
|species=human
 
|species=human
 
|start=129835232
 
|start=129835232

Latest revision as of 18:34, 19 July 2021

Basic information about the TSS


TSS ID:hg_102769.1
Species:human
Chr:chr9
TSS Classification:yes
Start:129835232
End:129835249
Strand:-
TSS Score:1
Start of the center position in the TSS region:129835240
End of the center position in the TSS region:129835241



Gene and protein annotation


Transcript_name:AF218421 BC017570 BC007664
Distance:0
GeneID:51759
HGNC/MGI_ID:HGNC:24932
UniProt_ID:
Gene_name:chromosome 9 open reading frame 78
Gene_symbol:C9orf78
Gene_synonyms:CSU2 HCA59 HSPC220
Gene_source:HGNC:24932



Transcript annotation


Transcript_name:AF218421 BC017570 BC007664
Distance:0
Num_trans:51759
All_trans:HGNC:24932



TATA-Box annotation


Distance to TSS:34
Nearest PromoterID:NM_016520
Entrez ID:51759
Nearest Unigene:Hs.278429
Nearest Refseq:NM_016520
Nearest Ensembl:ENSG00000136819
Gene Name:chromosome 9 open reading frame 78
Gene Alias:CSU2|HCA59|HSPC220|bA409K20.3
Gene Description:chromosome 9 open reading frame 78
Gene Type:protein-coding
CpG%:0.13
GC%:0.706468
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):