Difference between revisions of "TSS:Hg 102868.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|GRF2= | |GRF2= | ||
| − | |all_trans= | + | |all_trans=HGNC:4568 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 7: | Line 7: | ||
|distance_to_tss=83 | |distance_to_tss=83 | ||
|end=131709778 | |end=131709778 | ||
| + | |end_of_center_position=131709760 | ||
|entrez_id=2889 | |entrez_id=2889 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=C3G | + | |gene_alias=C3G{{!}}GRF2 |
|gene_description=Rap guanine nucleotide exchange factor 1 | |gene_description=Rap guanine nucleotide exchange factor 1 | ||
|gene_id=2889 | |gene_id=2889 | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_005312 | |nearest_refseq=NM_005312 | ||
|nearest_unigene=Hs.127897 | |nearest_unigene=Hs.127897 | ||
| − | |num_trans= | + | |num_trans=2889 |
|species=human | |species=human | ||
|start=131709740 | |start=131709740 | ||
| + | |start_of_center_position=131709759 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=67(GGCTTTAAAATG,-,0.00),68(GCTTTAAAATGG,+,0.00) |
| − | |transcript_name=ENST00000372190.7 | + | |transcript_name=ENST00000372190.7 BC041710 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102868.1 | |tss_id=hg_102868.1 | ||
Latest revision as of 18:36, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 131709759 |
|---|---|
| End of the center position in the TSS region: | 131709760 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372190.7 BC041710 |
|---|---|
| Distance: | 20 |
| Num_trans: | 2889 |
| All_trans: | HGNC:4568 |
TATA-Box annotation
| Distance to TSS: | 83 |
|---|---|
| Nearest PromoterID: | NM_198679 |
| Entrez ID: | 2889 |
| Nearest Unigene: | Hs.127897 |
| Nearest Refseq: | NM_005312 |
| Nearest Ensembl: | ENSG00000107263 |
| Gene Name: | Rap guanine nucleotide exchange factor 1 |
| Gene Alias: | C3G|GRF2 |
| Gene Description: | Rap guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 67(GGCTTTAAAATG,-,0.00),68(GCTTTAAAATGG,+,0.00) |
