Difference between revisions of "TSS:Hg 102870.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |GRF2= | ||
| + | |all_trans=NM_198679:32 ENST00000372190.7:153 BC041710:153 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=32 | ||
|distance_to_tss=-38 | |distance_to_tss=-38 | ||
| + | |end=131709886 | ||
| + | |end_of_center_position=131709880 | ||
|entrez_id=2889 | |entrez_id=2889 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=C3G | + | |gene_alias=C3G{{!}}GRF2 |
|gene_description=Rap guanine nucleotide exchange factor 1 | |gene_description=Rap guanine nucleotide exchange factor 1 | ||
| − | |gene_name=RAPGEF1 | + | |gene_id=2889 |
| + | |gene_name=Rap guanine nucleotide exchange factor 1 | ||
| + | |gene_source=HGNC:4568 | ||
| + | |gene_symbol=RAPGEF1 | ||
| + | |gene_synonyms=C3G | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4568 | ||
|nearest_ensembl=ENSG00000107263 | |nearest_ensembl=ENSG00000107263 | ||
|nearest_promoter_id=NM_198679 | |nearest_promoter_id=NM_198679 | ||
|nearest_refseq=NM_005312 | |nearest_refseq=NM_005312 | ||
|nearest_unigene=Hs.127897 | |nearest_unigene=Hs.127897 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=131709873 | ||
| + | |start_of_center_position=131709879 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_198679.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102870.1 | |tss_id=hg_102870.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q13905 | ||
}} | }} | ||
Latest revision as of 18:36, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 131709879 |
|---|---|
| End of the center position in the TSS region: | 131709880 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_198679.2 |
|---|---|
| Distance: | 32 |
| Num_trans: | 3 |
| All_trans: | NM_198679:32 ENST00000372190.7:153 BC041710:153 |
TATA-Box annotation
| Distance to TSS: | -38 |
|---|---|
| Nearest PromoterID: | NM_198679 |
| Entrez ID: | 2889 |
| Nearest Unigene: | Hs.127897 |
| Nearest Refseq: | NM_005312 |
| Nearest Ensembl: | ENSG00000107263 |
| Gene Name: | Rap guanine nucleotide exchange factor 1 |
| Gene Alias: | C3G|GRF2 |
| Gene Description: | Rap guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
