Difference between revisions of "TSS:Hg 102990.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:11476 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance_to_tss= | + | |distance=-184 |
| + | |distance_to_tss=6439 | ||
| + | |end=133363004 | ||
| + | |end_of_center_position=133362990 | ||
|entrez_id=6835 | |entrez_id=6835 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
|gene_alias=SURF-2 | |gene_alias=SURF-2 | ||
|gene_description=surfeit 2 | |gene_description=surfeit 2 | ||
| − | |gene_name= | + | |gene_id=6836 |
| + | |gene_name=surfeit 4 | ||
| + | |gene_source=HGNC:11476 | ||
| + | |gene_symbol=SURF4 | ||
| + | |gene_synonyms=ERV29 FLJ22993 MGC102753 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11476 | ||
|nearest_ensembl=ENSG00000148291 | |nearest_ensembl=ENSG00000148291 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_017503 |
|nearest_refseq=NM_017503 | |nearest_refseq=NM_017503 | ||
|nearest_unigene=Hs.159448 | |nearest_unigene=Hs.159448 | ||
| − | |tata_box= | + | |num_trans=6836 |
| + | |species=human | ||
| + | |start=133362974 | ||
| + | |start_of_center_position=133362989 | ||
| + | |strand=- | ||
| + | |tata_box=65(CAGTATTAAAGG,-,0.00) | ||
| + | |transcript_name=AK026646 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102990.1 | |tss_id=hg_102990.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:39, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 133362989 |
|---|---|
| End of the center position in the TSS region: | 133362990 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK026646 |
|---|---|
| Distance: | -184 |
| Num_trans: | 6836 |
| All_trans: | HGNC:11476 |
TATA-Box annotation
| Distance to TSS: | 6439 |
|---|---|
| Nearest PromoterID: | NM_017503 |
| Entrez ID: | 6835 |
| Nearest Unigene: | Hs.159448 |
| Nearest Refseq: | NM_017503 |
| Nearest Ensembl: | ENSG00000148291 |
| Gene Name: | surfeit 4 |
| Gene Alias: | SURF-2 |
| Gene Description: | surfeit 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 65(CAGTATTAAAGG,-,0.00) |
