Difference between revisions of "TSS:Hg 103203.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=4 |entrez_id=158062 |gc_percent=0.621891 |gene_alias=LCN5|UNQ643|hLcn5 |gene_description=lipocalin 6 |gene_name=LCN6 |gene_type=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |UNQ643= | ||
| + | |all_trans=HGNC:17337 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance_to_tss= | + | |distance=0 |
| + | |distance_to_tss=1 | ||
| + | |end=136748531 | ||
| + | |end_of_center_position=136748524 | ||
|entrez_id=158062 | |entrez_id=158062 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=LCN5 | + | |gene_alias=LCN5{{!}}UNQ643{{!}}hLcn5 |
|gene_description=lipocalin 6 | |gene_description=lipocalin 6 | ||
| − | |gene_name=LCN6 | + | |gene_id=158062 |
| + | |gene_name=lipocalin 6 | ||
| + | |gene_source=HGNC:17337 | ||
| + | |gene_symbol=LCN6 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |nearest_ensembl= | + | |hLcn5= |
| + | |hgnc_mgi_id=HGNC:17337 | ||
| + | |nearest_ensembl=ENSG00000267206 | ||
|nearest_promoter_id=NM_198946 | |nearest_promoter_id=NM_198946 | ||
|nearest_refseq=NM_198946 | |nearest_refseq=NM_198946 | ||
|nearest_unigene=Hs.522504 | |nearest_unigene=Hs.522504 | ||
| − | |tata_box= | + | |num_trans=158062 |
| + | |species=human | ||
| + | |start=136748516 | ||
| + | |start_of_center_position=136748523 | ||
| + | |strand=- | ||
| + | |tata_box=-32(CCATATAAACGG,+,0.00) | ||
| + | |transcript_name=ENST00000341206.9 BC062746 AF303084 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103203.1 | |tss_id=hg_103203.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R8I9 P62502 | ||
}} | }} | ||
Latest revision as of 18:43, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136748523 |
|---|---|
| End of the center position in the TSS region: | 136748524 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000341206.9 BC062746 AF303084 |
|---|---|
| Distance: | 0 |
| Num_trans: | 158062 |
| All_trans: | HGNC:17337 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_198946 |
| Entrez ID: | 158062 |
| Nearest Unigene: | Hs.522504 |
| Nearest Refseq: | NM_198946 |
| Nearest Ensembl: | ENSG00000267206 |
| Gene Name: | lipocalin 6 |
| Gene Alias: | LCN5|UNQ643|hLcn5 |
| Gene Description: | lipocalin 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(CCATATAAACGG,+,0.00) |
