Difference between revisions of "TSS:Hg 10322.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000376583.7:65 | + | |all_trans=ENST00000423400.7:53 ENST00000641759.1:53 ENST00000641909.1:53 ENST00000376583.7:65 LF213889:74 MA449466:74 ENST00000641805.1:-88 NM_001330358:-88 ENST00000641721.1:131 ENST00000641407.1:196 AB209113:196 AJ237672:334 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=42 |
|distance_to_tss=93 | |distance_to_tss=93 | ||
|end=11803589 | |end=11803589 | ||
| Line 12: | Line 12: | ||
|gene_description=methylenetetrahydrofolate reductase | |gene_description=methylenetetrahydrofolate reductase | ||
|gene_id=4524 | |gene_id=4524 | ||
| − | |gene_name=methylenetetrahydrofolate reductase | + | |gene_name=methylenetetrahydrofolate reductase |
|gene_source=HGNC:7436 | |gene_source=HGNC:7436 | ||
|gene_symbol=MTHFR | |gene_symbol=MTHFR | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_005957 | |nearest_refseq=NM_005957 | ||
|nearest_unigene=Hs.214142 | |nearest_unigene=Hs.214142 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=11803578 | |start=11803578 | ||
|start_of_center_position=11803583 | |start_of_center_position=11803583 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001330358.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10322.1 | |tss_id=hg_10322.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5SNW7 |
}} | }} | ||
Latest revision as of 18:44, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 11803583 |
|---|---|
| End of the center position in the TSS region: | 11803584 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001330358.2 |
|---|---|
| Distance: | 42 |
| Num_trans: | 12 |
| All_trans: | ENST00000423400.7:53 ENST00000641759.1:53 ENST00000641909.1:53 ENST00000376583.7:65 LF213889:74 MA449466:74 ENST00000641805.1:-88 NM_001330358:-88 ENST00000641721.1:131 ENST00000641407.1:196 AB209113:196 AJ237672:334 |
TATA-Box annotation
| Distance to TSS: | 93 |
|---|---|
| Nearest PromoterID: | NM_001330358 |
| Entrez ID: | 4524 |
| Nearest Unigene: | Hs.214142 |
| Nearest Refseq: | NM_005957 |
| Nearest Ensembl: | ENSG00000177000 |
| Gene Name: | methylenetetrahydrofolate reductase |
| Gene Alias: | - |
| Gene Description: | methylenetetrahydrofolate reductase |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
