Difference between revisions of "TSS:Hg 10339.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |ANP= | ||
| + | |ATFB6= | ||
| + | |ATRST2= | ||
| + | |CDD= | ||
| + | |CDD-ANF= | ||
| + | |CDP= | ||
| + | |PND= | ||
| + | |all_trans=HGNC:7939 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=101 | ||
|distance_to_tss=-104 | |distance_to_tss=-104 | ||
| + | |end=11847890 | ||
| + | |end_of_center_position=11847887 | ||
|entrez_id=4878 | |entrez_id=4878 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=ANF | + | |gene_alias=ANF{{!}}ANP{{!}}ATFB6{{!}}ATRST2{{!}}CDD{{!}}CDD-ANF{{!}}CDP{{!}}PND |
|gene_description=natriuretic peptide A | |gene_description=natriuretic peptide A | ||
| − | |gene_name=NPPA | + | |gene_id=4878 |
| + | |gene_name=natriuretic peptide A | ||
| + | |gene_source=HGNC:7939 | ||
| + | |gene_symbol=NPPA | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7939 | ||
|nearest_ensembl=ENSG00000175206 | |nearest_ensembl=ENSG00000175206 | ||
|nearest_promoter_id=NM_006172 | |nearest_promoter_id=NM_006172 | ||
|nearest_refseq=NM_006172 | |nearest_refseq=NM_006172 | ||
|nearest_unigene=Hs.75640 | |nearest_unigene=Hs.75640 | ||
| − | |tata_box= | + | |num_trans=4878 |
| + | |species=human | ||
| + | |start=11847883 | ||
| + | |start_of_center_position=11847886 | ||
| + | |strand=- | ||
| + | |tata_box=-34(AACTTTAAAAGG,-,0.00),-33(ACTTTAAAAGGG,+,0.00),-32(CTTTAAAAGGGC,+,0.00),72(GGCTATAAAAAG,-,0.00) | ||
| + | |transcript_name=ENST00000376480.7 ENST00000610706.1 BC005893 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10339.1 | |tss_id=hg_10339.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087X094 P01160 | ||
}} | }} | ||
Latest revision as of 18:47, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11847886 |
|---|---|
| End of the center position in the TSS region: | 11847887 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376480.7 ENST00000610706.1 BC005893 |
|---|---|
| Distance: | 101 |
| Num_trans: | 4878 |
| All_trans: | HGNC:7939 |
TATA-Box annotation
| Distance to TSS: | -104 |
|---|---|
| Nearest PromoterID: | NM_006172 |
| Entrez ID: | 4878 |
| Nearest Unigene: | Hs.75640 |
| Nearest Refseq: | NM_006172 |
| Nearest Ensembl: | ENSG00000175206 |
| Gene Name: | natriuretic peptide A |
| Gene Alias: | ANF|ANP|ATFB6|ATRST2|CDD|CDD-ANF|CDP|PND |
| Gene Description: | natriuretic peptide A |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(AACTTTAAAAGG,-,0.00),-33(ACTTTAAAAGGG,+,0.00),-32(CTTTAAAAGGGC,+,0.00),72(GGCTATAAAAAG,-,0.00) |
