Difference between revisions of "TSS:Hg 103406.1"
From referenceTSS
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|BS69= | |BS69= | ||
|MRD30= | |MRD30= | ||
| − | |all_trans=ENST00000381591.5:-191 | + | |all_trans=NM_001370114:0 NM_001370111:0 NM_001370110:0 NM_001370099:0 NM_001370108:0 ENST00000381604.9:188 NM_001370121:188 NM_001370123:188 NM_001202464:188 NM_001370117:188 NM_001370112:188 NM_001370100:188 ENST00000381591.5:-191 ENST00000602682.6:205 ENST00000403354.5:217 ENST00000381607.8:217 BC091489:217 ENST00000627286.2:241 ENST00000402736.5:242 ENST00000397955.7:252 NM_001370101:331 AK294469:-458 AK294781:-458 NM_001330057:-460 NM_001370124:-460 NM_001370122:-460 NM_001202465:-460 NM_001202466:-460 NM_001370120:-460 NM_001370116:-460 NM_001370115:-460 NM_001370113:-460 NM_001370098:-460 NM_001370107:-460 NM_001370097:-460 NM_001370106:-460 NM_212479:-460 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss=- | + | |distance_to_tss=-2 |
|end=135267 | |end=135267 | ||
| + | |end_of_center_position=135264 | ||
|entrez_id=10771 | |entrez_id=10771 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=BRAM1 | + | |gene_alias=BRAM1{{!}}BS69{{!}}MRD30 |
|gene_description=zinc finger MYND-type containing 11 | |gene_description=zinc finger MYND-type containing 11 | ||
|gene_id=10771 | |gene_id=10771 | ||
| Line 20: | Line 21: | ||
|hgnc_mgi_id=HGNC:16966 | |hgnc_mgi_id=HGNC:16966 | ||
|nearest_ensembl=ENSG00000015171 | |nearest_ensembl=ENSG00000015171 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370114 |
|nearest_refseq=NM_006624 | |nearest_refseq=NM_006624 | ||
|nearest_unigene=Hs.292265 | |nearest_unigene=Hs.292265 | ||
| − | |num_trans= | + | |num_trans=37 |
|species=human | |species=human | ||
|start=135259 | |start=135259 | ||
| + | |start_of_center_position=135263 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001370110.2 NM_001370111.2 NM_001370108.2 NM_001370114.2 NM_001370099.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103406.1 | |tss_id=hg_103406.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 18:48, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 135263 |
|---|---|
| End of the center position in the TSS region: | 135264 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001370110.2 NM_001370111.2 NM_001370108.2 NM_001370114.2 NM_001370099.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 37 |
| All_trans: | NM_001370114:0 NM_001370111:0 NM_001370110:0 NM_001370099:0 NM_001370108:0 ENST00000381604.9:188 NM_001370121:188 NM_001370123:188 NM_001202464:188 NM_001370117:188 NM_001370112:188 NM_001370100:188 ENST00000381591.5:-191 ENST00000602682.6:205 ENST00000403354.5:217 ENST00000381607.8:217 BC091489:217 ENST00000627286.2:241 ENST00000402736.5:242 ENST00000397955.7:252 NM_001370101:331 AK294469:-458 AK294781:-458 NM_001330057:-460 NM_001370124:-460 NM_001370122:-460 NM_001202465:-460 NM_001202466:-460 NM_001370120:-460 NM_001370116:-460 NM_001370115:-460 NM_001370113:-460 NM_001370098:-460 NM_001370107:-460 NM_001370097:-460 NM_001370106:-460 NM_212479:-460 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_001370114 |
| Entrez ID: | 10771 |
| Nearest Unigene: | Hs.292265 |
| Nearest Refseq: | NM_006624 |
| Nearest Ensembl: | ENSG00000015171 |
| Gene Name: | zinc finger MYND-type containing 11 |
| Gene Alias: | BRAM1|BS69|MRD30 |
| Gene Description: | zinc finger MYND-type containing 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
