Difference between revisions of "TSS:Hg 103448.1"
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{{TSSDetail | {{TSSDetail | ||
|NCRNA00168= | |NCRNA00168= | ||
| + | |all_trans=NR_152792:23 | ||
|bA466B20.1= | |bA466B20.1= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=23 |
| − | |distance_to_tss= | + | |distance_to_tss=-28 |
|end=1546737 | |end=1546737 | ||
|end_of_center_position=1546732 | |end_of_center_position=1546732 | ||
|entrez_id=642394 | |entrez_id=642394 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=C10orf109 | + | |gene_alias=C10orf109{{!}}NCRNA00168 |
|gene_description=ADARB2 antisense RNA 1 | |gene_description=ADARB2 antisense RNA 1 | ||
| − | |gene_name=ADARB2-AS1 | + | |gene_id=642394 |
| + | |gene_name=ADARB2 antisense RNA 1 | ||
| + | |gene_source=HGNC:23299 | ||
| + | |gene_symbol=ADARB2-AS1 | ||
| + | |gene_synonyms=bA466B20.1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:23299 | ||
|nearest_ensembl=ENSG00000205696 | |nearest_ensembl=ENSG00000205696 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_152792 |
|nearest_refseq=NM_001098830 | |nearest_refseq=NM_001098830 | ||
|nearest_unigene=Hs.568831 | |nearest_unigene=Hs.568831 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=1546726 | |start=1546726 | ||
|start_of_center_position=1546731 | |start_of_center_position=1546731 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-95(GCCCCTTAAGGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=NR_152792.1 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_103448.1 | |tss_id=hg_103448.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:49, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 1546731 |
|---|---|
| End of the center position in the TSS region: | 1546732 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_152792.1 |
|---|---|
| Distance: | 23 |
| Num_trans: | 1 |
| All_trans: | NR_152792:23 |
TATA-Box annotation
| Distance to TSS: | -28 |
|---|---|
| Nearest PromoterID: | NR_152792 |
| Entrez ID: | 642394 |
| Nearest Unigene: | Hs.568831 |
| Nearest Refseq: | NM_001098830 |
| Nearest Ensembl: | ENSG00000205696 |
| Gene Name: | ADARB2 antisense RNA 1 |
| Gene Alias: | C10orf109|NCRNA00168 |
| Gene Description: | ADARB2 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -95(GCCCCTTAAGGC,-,0.00) |
