Difference between revisions of "TSS:Hg 103564.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:54146 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=-58 |
|distance_to_tss=78140 | |distance_to_tss=78140 | ||
|end=3912095 | |end=3912095 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2639 |
| − | |gene_name= | + | |gene_id= |
| + | |gene_name=long intergenic non-protein coding RNA 2660 | ||
| + | |gene_source=HGNC:54146 | ||
| + | |gene_symbol=LINC02660 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:54146 | ||
|nearest_ensembl=ENSG00000230573 | |nearest_ensembl=ENSG00000230573 | ||
|nearest_promoter_id=NR_134490 | |nearest_promoter_id=NR_134490 | ||
|nearest_refseq=NR_134490 | |nearest_refseq=NR_134490 | ||
|nearest_unigene=Hs.460114 | |nearest_unigene=Hs.460114 | ||
| − | |num_trans= | + | |num_trans= |
|species=human | |species=human | ||
|start=3912084 | |start=3912084 | ||
|start_of_center_position=3912089 | |start_of_center_position=3912089 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000648503.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_103564.1 | |tss_id=hg_103564.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:51, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3912089 |
|---|---|
| End of the center position in the TSS region: | 3912090 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000648503.1 |
|---|---|
| Distance: | -58 |
| Num_trans: | |
| All_trans: | HGNC:54146 |
TATA-Box annotation
| Distance to TSS: | 78140 |
|---|---|
| Nearest PromoterID: | NR_134490 |
| Entrez ID: | 105376365 |
| Nearest Unigene: | Hs.460114 |
| Nearest Refseq: | NR_134490 |
| Nearest Ensembl: | ENSG00000230573 |
| Gene Name: | long intergenic non-protein coding RNA 2660 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2639 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
