Difference between revisions of "TSS:Hg 103613.1"
From referenceTSS
| Line 10: | Line 10: | ||
|HBAB= | |HBAB= | ||
|MBAB= | |MBAB= | ||
| − | |all_trans= | + | |all_trans=HGNC:384 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 32: | Line 32: | ||
|nearest_refseq=NM_001353 | |nearest_refseq=NM_001353 | ||
|nearest_unigene=Hs.460260 | |nearest_unigene=Hs.460260 | ||
| − | |num_trans= | + | |num_trans=1645 |
|species=human | |species=human | ||
|start=4963388 | |start=4963388 | ||
| Line 38: | Line 38: | ||
|strand=+ | |strand=+ | ||
|tata_box=-5(GCTCTTATAGCC,+,0.00) | |tata_box=-5(GCTCTTATAGCC,+,0.00) | ||
| − | |transcript_name=ENST00000380872.9 | + | |transcript_name=ENST00000380872.9 AK310658 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103613.1 | |tss_id=hg_103613.1 | ||
Latest revision as of 18:52, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4963390 |
|---|---|
| End of the center position in the TSS region: | 4963391 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380872.9 AK310658 |
|---|---|
| Distance: | 23 |
| Num_trans: | 1645 |
| All_trans: | HGNC:384 |
TATA-Box annotation
| Distance to TSS: | -25 |
|---|---|
| Nearest PromoterID: | NM_001353 |
| Entrez ID: | 1645 |
| Nearest Unigene: | Hs.460260 |
| Nearest Refseq: | NM_001353 |
| Nearest Ensembl: | ENSG00000187134 |
| Gene Name: | aldo-keto reductase family 1 member C1 |
| Gene Alias: | 2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB |
| Gene Description: | aldo-keto reductase family 1 member C1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -5(GCTCTTATAGCC,+,0.00) |
