Difference between revisions of "TSS:Hg 103827.1"
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001326323:133 NM_001326319:133 NM_001326318:133 NM_001326317:133 NM_001326321:133 NM_001326320:133 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=133 |
|distance_to_tss=-62 | |distance_to_tss=-62 | ||
|end=10462417 | |end=10462417 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=CELF2 divergent transript |
| − | |gene_name= | + | |gene_id=10659 |
| + | |gene_name=CUGBP Elav-like family member 2 | ||
| + | |gene_source=HGNC:2550 | ||
| + | |gene_symbol=CELF2 | ||
| + | |gene_synonyms=BRUNOL3 Etr-3 NAPOR-2 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:2550 | ||
|nearest_ensembl=ENSG00000270111 | |nearest_ensembl=ENSG00000270111 | ||
|nearest_promoter_id=NR_120637 | |nearest_promoter_id=NR_120637 | ||
|nearest_refseq=NR_120637 | |nearest_refseq=NR_120637 | ||
|nearest_unigene=Hs.576789 | |nearest_unigene=Hs.576789 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=10462404 | |start=10462404 | ||
|start_of_center_position=10462410 | |start_of_center_position=10462410 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001326317.2 NM_001326318.2 NM_001326321.2 NM_001326319.2 NM_001326320.2 NM_001326323.2 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_103827.1 | |tss_id=hg_103827.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=O95319 | ||
}} | }} | ||
Latest revision as of 18:57, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 10462410 |
|---|---|
| End of the center position in the TSS region: | 10462411 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001326317.2 NM_001326318.2 NM_001326321.2 NM_001326319.2 NM_001326320.2 NM_001326323.2 |
|---|---|
| Distance: | 133 |
| Num_trans: | 6 |
| All_trans: | NM_001326323:133 NM_001326319:133 NM_001326318:133 NM_001326317:133 NM_001326321:133 NM_001326320:133 |
TATA-Box annotation
| Distance to TSS: | -62 |
|---|---|
| Nearest PromoterID: | NR_120637 |
| Entrez ID: | 101928322 |
| Nearest Unigene: | Hs.576789 |
| Nearest Refseq: | NR_120637 |
| Nearest Ensembl: | ENSG00000270111 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | - |
| Gene Description: | CELF2 divergent transript |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
