Difference between revisions of "TSS:Hg 103834.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=-135 |entrez_id=10659 |gc_percent=0.58209 |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |gene_description="CUGBP, E...") |
|||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CELF-2= | ||
| + | |CUG-BP2= | ||
| + | |CUGBP2= | ||
| + | |ETR-3= | ||
| + | |ETR3= | ||
| + | |NAPOR= | ||
| + | |all_trans=HGNC:2550 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance_to_tss=- | + | |distance=35 |
| + | |distance_to_tss=-149 | ||
| + | |end=10798581 | ||
| + | |end_of_center_position=10798576 | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=BRUNOL3 | + | |gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR |
| − | |gene_description= | + | |gene_description=CUGBP Elav-like family member 2 |
| − | |gene_name=CELF2 | + | |gene_id=10659 |
| + | |gene_name=CUGBP Elav-like family member 2 | ||
| + | |gene_source=HGNC:2550 | ||
| + | |gene_symbol=CELF2 | ||
| + | |gene_synonyms=BRUNOL3 Etr-3 NAPOR-2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2550 | ||
|nearest_ensembl=ENSG00000048740 | |nearest_ensembl=ENSG00000048740 | ||
|nearest_promoter_id=NM_001326328 | |nearest_promoter_id=NM_001326328 | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |tata_box= | + | |num_trans=10659 |
| + | |species=human | ||
| + | |start=10798570 | ||
| + | |start_of_center_position=10798575 | ||
| + | |strand=+ | ||
| + | |tata_box=-36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGT,+,0.00) | ||
| + | |transcript_name=ENST00000638035.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103834.1 | |tss_id=hg_103834.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O95319 | ||
}} | }} | ||
Latest revision as of 18:57, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10798575 |
|---|---|
| End of the center position in the TSS region: | 10798576 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000638035.1 |
|---|---|
| Distance: | 35 |
| Num_trans: | 10659 |
| All_trans: | HGNC:2550 |
TATA-Box annotation
| Distance to TSS: | -149 |
|---|---|
| Nearest PromoterID: | NM_001326328 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGT,+,0.00) |
