Difference between revisions of "TSS:Hg 103840.1"
From referenceTSS
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| Line 6: | Line 6: | ||
|ETR3= | |ETR3= | ||
|NAPOR= | |NAPOR= | ||
| − | |all_trans=NM_001025077: | + | |all_trans=NM_001326336:175 NM_001326332:175 NM_001326331:175 NM_001025077:175 NM_001326337:175 NM_001326335:175 NM_001326334:175 NM_001326333:175 ENST00000416382.6:184 AF090693:184 ENST00000631460.1:187 ENST00000633200.1:198 AK297380:198 ENST00000631816.1:240 AK299548:240 NM_001326329:-461 NM_001326330:-461 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=175 |
| − | |distance_to_tss= | + | |distance_to_tss=-189 |
|end=11005137 | |end=11005137 | ||
| + | |end_of_center_position=11005123 | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| − | |gene_alias=BRUNOL3 | + | |gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR |
| − | |gene_description= | + | |gene_description=CUGBP Elav-like family member 2 |
|gene_id=10659 | |gene_id=10659 | ||
| − | |gene_name= | + | |gene_name=CUGBP Elav-like family member 2 |
|gene_source=HGNC:2550 | |gene_source=HGNC:2550 | ||
|gene_symbol=CELF2 | |gene_symbol=CELF2 | ||
| Line 27: | Line 28: | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=11005108 | |start=11005108 | ||
| + | |start_of_center_position=11005122 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_001025077 | + | |transcript_name=NM_001326333.2 NM_001326332.2 NM_001025077.3 NM_001326331.2 NM_001326337.2 NM_001326335.2 NM_001326336.2 NM_001326334.2 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_103840.1 | |tss_id=hg_103840.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=O95319 | + | |uniprot_id=A0A0J9YX66 O95319 |
}} | }} | ||
Latest revision as of 18:57, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 11005122 |
|---|---|
| End of the center position in the TSS region: | 11005123 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001326333.2 NM_001326332.2 NM_001025077.3 NM_001326331.2 NM_001326337.2 NM_001326335.2 NM_001326336.2 NM_001326334.2 |
|---|---|
| Distance: | 175 |
| Num_trans: | 17 |
| All_trans: | NM_001326336:175 NM_001326332:175 NM_001326331:175 NM_001025077:175 NM_001326337:175 NM_001326335:175 NM_001326334:175 NM_001326333:175 ENST00000416382.6:184 AF090693:184 ENST00000631460.1:187 ENST00000633200.1:198 AK297380:198 ENST00000631816.1:240 AK299548:240 NM_001326329:-461 NM_001326330:-461 |
TATA-Box annotation
| Distance to TSS: | -189 |
|---|---|
| Nearest PromoterID: | NM_001326332 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
